Array 1 16918-18447 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXC01000041.1 Pseudomonas aeruginosa isolate O, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16918 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 16978 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 17038 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 17098 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 17158 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 17218 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 17279 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 17339 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 17399 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 17459 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 17519 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 17579 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 17639 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 17699 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 17759 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 17819 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 17879 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 17939 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 17999 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 18059 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 18119 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 18179 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 18239 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 18299 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 18359 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 18420 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28610-27321 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXC01000041.1 Pseudomonas aeruginosa isolate O, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28609 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 28549 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 28490 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 28430 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 28370 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 28310 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 28250 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 28190 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 28129 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 28069 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 28009 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 27949 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 27889 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 27829 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 27769 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 27708 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 27648 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 27588 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 27528 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 27468 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 27408 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 27348 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //