Array 1 164015-165635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLM010000002.1 Veillonella parvula strain DFI.7.67 EIKLBFHH_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 164015 36 100.0 30 .................................... TTCTATGATGAATTAGAATATAAAGCCTGT 164081 36 100.0 31 .................................... TATTGTCTTTTAATTCTTCCATGTCTAAAGA 164148 36 100.0 30 .................................... TCACATATTGGATTAAGTATTAACGATGTA 164214 36 100.0 30 .................................... ATAAAAAAGAGGTGAGATCGTGGCAGCTAA 164280 36 100.0 30 .................................... TTTCTTTCTTTTCCAATGTCTCTAGAATGT 164346 36 100.0 30 .................................... GATATTTTGTGCGAATTCACCCGGACTATC 164412 36 100.0 30 .................................... CACCCCCTTTTCTATTTGATATACTTGCGA 164478 36 100.0 30 .................................... CACCCCCTTTTCTATTTGATATACTTGCGA 164544 36 100.0 30 .................................... TAAAGTAGAGGTGATGCAATGCTAAAAGCA 164610 36 100.0 30 .................................... ATCACTCTTATTCACATAATGTACATCGCT 164676 36 100.0 30 .................................... CTGCCGTTGTGGCTCTTACACCAACACCTT 164742 36 100.0 30 .................................... CATCTGTTCACGTTCATGAAATGTGCCACG 164808 36 100.0 30 .................................... AAACTTTGGAGTGAACACCTTGTATGGTTC 164874 36 100.0 30 .................................... CGCCATATCCTTTTTGTAACCATACATGGA 164940 36 100.0 30 .................................... TGGAACATATGTGAAATGTCCACAGTCCTT 165006 36 100.0 30 .................................... GAACTTGATGCGGTTAAGGCAAGATTATCT 165072 36 100.0 30 .................................... TAATAGGTTCTTTTCAATCTGCAGTCTTTG 165138 36 100.0 30 .................................... GTTGGCTTCATCAGATACATAACCACTAAT 165204 36 100.0 30 .................................... GCTGTATATCATTCATATTGTTATTTCCCC 165270 36 100.0 30 .................................... CCCTTATCATACTGATATCCGACTGCATTC 165336 36 100.0 30 .................................... TCATTAATGAGGAATAAGCTCAAATCTGTA 165402 36 100.0 30 .................................... TCCGTAGAAGTGCTGAAAGGGCTGCCTGAT 165468 36 100.0 30 .................................... TGAAATAATTAGACACCCTTTACCTAACGC 165534 36 97.2 30 ...................................T GCGATTGGGATTATGCAAAACTAGCAGAGG 165600 36 97.2 0 ...............G.................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.8 30 GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Left flank : AACTAAATTACAAAACCAACTATCTAAAGACGCTTTATTGATGACTGAAGAGGTAGCGGATATTGTAAATCGACTTCATGCCTTTTACTATTCTTTAGAATTTGGATATCCTTTATCAATCCAACATAAACTTGAAATTGGTACTGCTGAACTTATTAAGTTAGGTAGCTTTAACTTTGAGTTTAATCGTACAGGGGATATTATGGATTTCATGTCCTACATAGAAGTGGTTGATACATTATTATCTCCCATGGTATATATTATGGTAAATCTAGATTTAGTTTTAAATGATGATGAGATTAATGCATTTTATCACAACATGTTGAGTAGACAATTACGATTAGTTTGTTTAACGACAGGATCTTTTGTTAAAGAAAATCTTGATAAAAGTCTTATTAATGGGTATATTTTAGATAATGATTTTTGTGTTATTTAAGGAGTATACAGAATTACACCTGGTGGTAGCCCGAGTTACTCTTGAGCCTCAAATTTAATTTGGG # Right flank : CGAGCAAATTAGATCCTTCTTTAAAGATTTGGTTTGAGAGTAATGTAATTAGAATTTAGTAGATTATAAATTTGTGAAATGACATAAAAAGCCGAGCTACCTTGTTTTAGTAGCTCGGCTTTATTTGTTAATTTATATATTTATATAATATGATGCTTATTGTATCGTATATTAGTTCGCTCTATAATAGATTTAGGATAGTTAGACGAGGTTGGGACTCTCTTCGTTTTTGAAGGGAGGGATAAGTCTATGAGCGATTATGAAATAATCATGCTCCTGTTACAAGTAATGGCTATTGTTATTGCTTTTGGGGCTTTAATAGCACTTATTTGCCTTACAAGAAGCAAATAGCCCTCCGTTGCCTAGTGTAACTAGATAACTGAAAGGCCATTTCCTAATGTTTTACTGATTTAGAGATGAGCCTGACGGCACTACTCGTCTGACTATCTACCTATATTATAGGGATAAAGATTTATATCGTCAAATTGAGATAAACCTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 216973-218189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLM010000002.1 Veillonella parvula strain DFI.7.67 EIKLBFHH_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 216973 36 100.0 30 .................................... GCGGTACAGATGCTGCTCGTGATAAACTTT 217039 36 100.0 29 .................................... CTTCGAACTCATCCCAGGACTCAATAGGT 217104 36 100.0 30 .................................... CAAGAGCCCTTCGAGATAGTGCCCGGTGTA 217170 36 100.0 30 .................................... AAGTTGGATGCAGAAATAGAGATTGATATA 217236 36 100.0 30 .................................... AATTACTAATTATTTACCAGGGTTTTTGTA 217302 36 100.0 30 .................................... TATCAAGCTTTATTATGGATAGCGCATATA 217368 36 100.0 30 .................................... ATCCGCATTATTCAGTTGGCTCATAGAATA 217434 36 100.0 30 .................................... CGAACGCTATAGCATCTACCGCCGATGAGT 217500 36 100.0 30 .................................... TCTATACCAGATAAAGCAACTATAACCAGT 217566 36 100.0 30 .................................... GTTCGCCATCTTTGACTTTGCGAATACCAT 217632 36 100.0 30 .................................... AAAAAGAAGAATGTGAAGATTGCCCTGCAT 217698 36 100.0 30 .................................... TCAATTCGCCGAATGTTGGTGCAATCGTAA 217764 36 100.0 30 .................................... TCTATGAAAATCTAGAAGATTATATCTTGT 217830 36 100.0 30 .................................... TCACCACATCAACAGATATTGAAGTGAATG 217896 36 100.0 30 .................................... ATCAAGTTGTAACTTTAGGCGGCGGCCCAT 217962 36 100.0 30 .................................... CATCATGCTTACAACATCATTGCTCACATT 218028 36 97.2 30 ...................................T TTAGCACAGAGCTAGGTAGGTGGTTTTTTT 218094 35 88.9 25 ...........................-A.A..T.. CATTAAGAACGTCCATGTACACAGA 218154 35 77.8 0 .G.........T...G..CG..-...........TT | T [218179] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 98.1 30 GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Left flank : TAGGTTGGGGGTTCGATTCCCTCTAGGCGCACCAGAAGGATAGAGCTGCAGTTTCGCCTTAATACTCGTGAGAATCTATTAAGGTAGGGCCTTATGCCGAAATCAAAGGACACAATTTATTGTGTCCTTTTCCTATTTTAATCATATTAAAACTATCTTTTTATCAAGATAATAGTTGAGTAATTATGGTTATTTAGTAAAAATTAAAACTGATTGATGAATAAAAATTAGAAAAGCTTGACATATAAGTAATGCTGATATATTATGTAATTAGATTTTACCATAGCGAAAGGTTACAGAATCTACTAAAATAAGACTTTATGTCGAAATCACTACTTTTAAGTAGTTATTAACAATAGTATATGTAAATTGAGTTAGTAGTACATATTACTAATGTTTTTTGTGTGAAATTTTGAGCACGGGTCTTATGATCTGTGCTCTTTTTGTTTATTGATTTATTATAGCGAAAGGCTACAAAAGTGCTTAACTTCGTTGTTGGG # Right flank : TTAGAATAATAGAAGAGAATAATTTTCTAATTATTATAATTTTATGTATTAAATAGGATTAATAATTTTTAGGGGAGGGTATATATGGGATATATACTAGGATTAGATATCGGGGTTGCTTCTGTTGGTTATGCAATAATTGATGAAAATTATAATGTCCTAATTAGTGGGGTAAGACTATTTCGTGAGGGTACGGCAGAAGAGAATGTAGCACGCAGAGGGTTCAGAAGTATTCGTAGAAGTATGAGGCGGAACCGTCATAGATTGGATCGACTAAAAGAACTCTTGTCGAGTGCACTAGGTGTGAGTGGAGATCAATTTTATACAAATCTCTATGAAATTAGAGTTAGAGGACTTAGTAATAAGCTTTCGCCTGATGAATTGATTGCTGCAATCATTCAATTGGCTAAACATAGAGGTATATTTTATTTAAGTCCAGAGGATCTTGCGACTGAGGACGGAAGTAACCAGAGTTCAGCAGATATTATTCGAACTAATGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //