Array 1 1793-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJK01000019.1 Salmonella sp. S134_54621 NODE_19_length_88287_cov_147.691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1792 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1731 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 1670 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 1609 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1548 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 1487 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1426 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 1365 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 1304 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 1243 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 1182 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 1121 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 1060 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 999 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 938 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 877 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 816 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 755 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 694 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 633 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 572 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 511 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 450 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 389 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 328 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 267 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 206 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163112-159298 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJK01000009.1 Salmonella sp. S134_54621 NODE_9_length_179663_cov_146.479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163111 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 163050 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 162989 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 162928 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 162867 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 162806 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 162745 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 162684 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 162623 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 162562 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 162501 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 162440 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 162378 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 162317 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 162256 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 162195 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 162134 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 162073 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 162012 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 161951 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 161890 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 161829 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 161768 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 161707 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 161645 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 161584 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 161523 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 161462 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 161401 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 161340 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 161279 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 161218 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 161157 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 161096 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 161035 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 160973 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 160912 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 160851 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 160790 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 160729 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 160668 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 160607 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 160546 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 160485 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 160424 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 160363 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 160302 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 160241 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 160180 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 160118 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 160057 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 159996 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 159935 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 159874 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 159813 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 159752 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 159691 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 159630 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 159569 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 159508 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 159447 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 159386 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 159325 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //