Array 1 104242-105367 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYN01000063.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N1536 SEEH1536_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104242 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 104303 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 104364 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 104425 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 104486 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 104547 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 104608 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 104669 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 104730 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 104791 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 104852 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 104913 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 104974 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 105035 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 105096 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 105157 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 105218 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 105279 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 105340 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121626-123289 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYN01000063.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N1536 SEEH1536_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 121626 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 121687 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 121748 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 121809 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 121876 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 121937 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 121998 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 122059 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 122120 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 122181 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 122242 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 122303 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 122364 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 122425 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 122486 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 122547 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 122608 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 122669 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 122730 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 122791 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [122833] 122833 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 122894 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 122955 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 123016 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 123077 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 123138 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 123199 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 123260 29 96.6 0 A............................ | A [123286] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //