Array 1 106743-108053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMLN010000007.1 Salmonella enterica subsp. enterica serovar Cannstatt strain 130-20 130-20_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106743 29 100.0 32 ............................. CAATGCAGCAATAAACACACAAAACAAAAACA 106804 29 100.0 33 ............................. CATTATCGGGCGCCTGTACGGCGTCATTACTGC 106866 29 100.0 32 ............................. AGTTGGTTATGCCTGACACGTCCTGCAAATTC 106927 29 100.0 32 ............................. AATGAGCGCCAGTTTTAAAGTCGCGGGGTCCG 106988 29 100.0 32 ............................. CTATTTTTGAGTCAGTGGTCGAAAACGAAAAT 107049 29 100.0 33 ............................. AATACGCGTCAGACTTTATCGATTTTTTACGGC 107111 29 100.0 32 ............................. GCGCAGGTGGGCGAGCACGTCGCGGGGTTCGG 107172 29 100.0 32 ............................. GTGAATACGTGGTTATTTATACTGATACTAAT 107233 29 100.0 32 ............................. TCACGGGGTCTGACGCGGATGTAATGAGTTAT 107294 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTGGT 107355 29 100.0 32 ............................. GGGGATGCGTTAATAGCAGTAAAGCAGCCATA 107416 29 100.0 32 ............................. TTGGTATTGTGAACATGACAATACAGGCATCC 107477 29 100.0 32 ............................. CTAACTGGTATGCTACGAAGGCGTCTTTATGG 107538 29 100.0 32 ............................. AACGATTAAACCTGCCAGTTATCGCTGAACAG 107599 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 107660 29 100.0 32 ............................. CAACGGCGGATTAGACGCCCCACAGAGTAACA 107721 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 107782 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 107843 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 107904 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 107965 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 108026 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124213-125926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMLN010000007.1 Salmonella enterica subsp. enterica serovar Cannstatt strain 130-20 130-20_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 124213 29 100.0 32 ............................. CCTGAGCATGTGACGGCTGCGCAGCTCAAGCG 124274 29 100.0 32 ............................. GATCAGGAGCAATTAGCGGGTCTGGGGTTAGT 124335 29 100.0 32 ............................. TTAGTTTGTACAAGCGAAGCCTTAGCCACGGC 124396 29 100.0 32 ............................. CGAGCTAAAGAAATCGCACTTGATGAAATCGT 124457 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 124518 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 124579 29 96.6 32 ............T................ GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 124640 29 100.0 33 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGGG 124702 29 96.6 32 .G........................... CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 124763 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 124825 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 124886 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 124947 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 125008 29 100.0 32 ............................. GGACAAAGACAACGAGCGCATGGTGCATACGG 125069 29 100.0 32 ............................. AGGCTGGTGTAATTATCGCAGGGCATGGGCGG 125130 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 125192 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 125253 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 125314 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 125375 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 125436 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 125497 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 125558 29 100.0 65 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAACGTGTTCCCCCAAGGTTCAAAAATTCAATATGAG 125652 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 125713 29 100.0 32 ............................. CCTGGCACTCTAAAGCGGTGCGCCATACCCGG 125774 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 125836 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 125897 29 96.6 0 A............................ | A [125923] ========== ====== ====== ====== ============================= ================================================================= ================== 28 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGAACAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //