Array 1 57757-57118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZTJ010000010.1 Escherichia coli strain 22 Contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57756 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 57695 29 100.0 32 ............................. TCATGAAGACTTCGATTATTTCTTGATACCTG 57634 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 57573 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 57512 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 57451 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 57390 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 57329 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 57268 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 57206 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 57145 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84677-83303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZTJ010000010.1 Escherichia coli strain 22 Contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84676 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 84615 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 84554 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 84493 29 100.0 32 ............................. GCAGACGTTACGGAACGGCGCGCGAGTATAGC 84432 29 100.0 32 ............................. AACAGGCCTGGGTCGACGAATTGCAAGAGGTC 84371 29 100.0 32 ............................. CAACTTGGCGACACAGACGTAACGGCGGTGTC 84310 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 84249 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 84188 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 84127 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 84066 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 84005 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 83943 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 83882 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 83820 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 83759 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 83698 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 83637 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 83576 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 83515 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 83454 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 83393 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 83331 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //