Array 1 1496861-1496479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077423.1 Streptococcus gallolyticus subsp. gallolyticus TX20005 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1496860 36 100.0 30 .................................... TCACAAGGGAAGATAACTCCAGACCAAAAA 1496794 36 100.0 30 .................................... TCACAAGGGAAGATAACTCCAGACCAAAAA 1496728 36 100.0 30 .................................... TGAATCTGCTAGAACACCATTGTCTCTAGA 1496662 36 97.2 30 .................................A.. ATTAAAGTGTGACAAATAGTCATAGTAAGT 1496596 36 97.2 46 .................................A.. CGAATGGTTCCAAAACCTGCCATTAAAATAACACCGCTAAGAAGCA 1496514 36 94.4 0 ..............T..................A.. | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 98.1 33 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAGAC # Left flank : TGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTAGAACGTGAAATCGCCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGTGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TCTAACATTAATCATTGTCATTCGAGTTGAGTTTTAGCGCTGTGCTGTTTATTTTAGCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTTCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAGAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1499059-1497504 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077423.1 Streptococcus gallolyticus subsp. gallolyticus TX20005 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1499058 36 100.0 30 .................................... AAACATTTTACGTCGATATTATGGAAAATT 1498992 36 100.0 30 .................................... ATCCAGTGGTGGAGGTGGTACTGGACAAGT 1498926 36 100.0 30 .................................... CGGTGATGTGCTATTATCTGTCGTTAACGT 1498860 36 100.0 30 .................................... AAATAACGTTTCTGTTAAAGCATATATTCA 1498794 36 100.0 30 .................................... CGTGCCAATTTCCAAAACGTTGCATTTTAA 1498728 36 100.0 30 .................................... CAATTCAGTAAAAGATAAGATGGAAGGGCT 1498662 36 100.0 30 .................................... AAGACACGTTGTTCACAGACATGCAAAATA 1498596 36 100.0 30 .................................... AAGTCAATGATTTCAAAGTCGTTAGTGAGT 1498530 36 100.0 30 .................................... GATTATTGATGTTATAATGACGTATACACA 1498464 36 100.0 31 .................................... CTAGTAAAGTTGCTCTTCTTGATAATATTCA 1498397 36 100.0 30 .................................... TACGAATTTCGAATATAATCATTCACTTCT 1498331 36 100.0 30 .................................... TCCGACATTTTACCTTACAAGACAAAATGA 1498265 36 100.0 30 .................................... TGCTGACATATTTTCCCAATTGCTAGGAAT 1498199 36 100.0 30 .................................... GATTTTCTTTGCGTATATGTATTTCGCACG 1498133 36 100.0 30 .................................... ATAATGACAAATCAAAAGATAATTCAGTAT 1498067 36 100.0 30 .................................... ATTGTTTGACCCATGAATTCTAACATCAAT 1498001 36 100.0 30 .................................... TCATCTCCAAAACGTTTGAAATAATCAAAA 1497935 36 100.0 30 .................................... TGACGCAGGTGTTAAACTATTGCAAACTTT 1497869 36 100.0 30 .................................... TCCTAAAAATAAATTTGACGAATTGCTATC 1497803 36 100.0 30 .................................... ACTATCACTTCTCTTTAAAAATGAATAACA 1497737 36 100.0 30 .................................... CTAAACCATAATTAAAAATTGTGTCGTCTT 1497671 36 100.0 30 .................................... TTTTACAAATAACCCAAGACATCTATAACG 1497605 36 100.0 30 .................................... ACAATCGAGTGTATTTACGAAGCTTGGTTC 1497539 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGATGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATCTAGATGAAGGTTTAGAGCTTCCAAAGGTTGTTAATATGAGTGAATTATCAGTTGAAGATGGTTTTATCACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACTGTTCCAGAATGGTTAGTCAGATTAGCAGACCGTGAGAATGTGAATTACTCGGAGGTTTTGACACAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGCTTTTGAGGTATAATATAGTTAAAAATAATGAACCGTTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTTATCAGAAATAGAATGCCATGAAACTTATTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAGACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //