Array 1 15599-14310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJEPD010000076.1 Streptococcus sanguinis strain SW01 ss_sw01.contig.76_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 15598 36 100.0 30 .................................... GAGAGAGCTAAACAAAGAGGCTAAACTCAG 15532 36 100.0 29 .................................... ACTAAGGAAGAACCGAAAAACGCAGCAGA 15467 36 100.0 30 .................................... CTGAAAACAAAAATCAAAACATCTTTTTCA 15401 36 100.0 30 .................................... AAAGATTTGCCATTGCTAATAATACAAACA 15335 36 100.0 30 .................................... TTCTTTTACAGATTCTACTAGTTCATCTCT 15269 36 100.0 30 .................................... AAGAAGATTTTACACTATCTACAAATGACC 15203 36 100.0 30 .................................... GGCTGATCGAGGACGAAAAGCCTTATCAGA 15137 36 100.0 31 .................................... CTTTGTGATATTAAGAATTACATTTTCTTCA 15070 36 100.0 30 .................................... TAGCCGGCAAATGGAGCGCATGGTCAACCA 15004 36 100.0 30 .................................... GATGGCATTACCTAGGGCGCCATCAAAAGG 14938 36 100.0 30 .................................... AAGCAGGGTTGATTTACCGGTCGGATGTGT 14872 36 100.0 30 .................................... CAGCTTCAACAATTAAAACAAATTGGATAG 14806 36 100.0 30 .................................... TTTGTTTCATGTTCTTTGGTTTCTCCTTAA 14740 36 100.0 30 .................................... TACTCCCTGCTTCAAAAGCGAACTTCTCGC 14674 36 100.0 30 .................................... TCTAGAACTCATGCTCGAGTATCAAGGGGC 14608 36 100.0 30 .................................... ATATTATAGTTATATCAAGTTAAGAGCTTG 14542 36 100.0 30 .................................... TCTTTTCATCATCATAAGACCTAACCTCTG 14476 36 100.0 30 .................................... AAGTCAAAGAATAATCTTAAAGCTGGTACA 14410 36 100.0 29 .................................... TGTTATAGCTGGTGTTGGTGCTCCAGAGG 14345 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATAGTTATTTAAACTATAGTGAGTTTATAAATTGTTGTAAAAAGATGAATGAGATGACTATGGATTTACAAAATTTTCACGTTATTAACTTTCTATCAAGCGAGGGATATATTTATATAAATAAAGAAAATATAATGAATGTTAATATTGTTGCGGATTTAGTAGAACACTTTTACGAATTTTCATTTATGTATGAAAGATTTTTTGGTCAATATCCTGCTAATGAGGTACCGGATGAAAAGGTTTTTTTAGAGTCGTTACAAAAAGTTTCATCATATCTTTTTAGTAAGGATATTGCTCATATTAGTTTATCTATTCCAGATATAGTTACTTTGAAAATTATAAATCATTTGTACCAATACGATAAAAAGCCAAGAATTTGTTCTACGATGTCTAATCCGCTATTAATTAAGTTTTTGAATACCTATAATTGACAGGAATCGCAATAGGCATTATAATCAATATATGAGTATAAAAATCACAATTTTTCCATTTGAG # Right flank : AGCTTACTATAGACCAGATAGCGTTGTTCTGTTTTTATTATAGTTTAGGATAGAGGGGAATCTGTAATGTTTTATCATAAAAAGGGCTGAGTAAATCAGTCCTTTTGTTCTCTATTTCCCCAAGCAGAATTGGCTGAAGAGTTGGGTGATGAGTTCGTCTGGTGCGGCGTCACCAGTGATTTCGCCGAGGATTTCCCAGGTGCGAGTCATATCGACTTGGAGAAGATCGACCGGCATACCCATGTCCAAGCCTTGGTTGACGGCTTGCAAGCTTTCCAGAGCTTTTTCAATCAAGGAGATATGGCGGGCGTTTGACAGGTAGGTGGCGTCTTGCTCGACGATACCAGCATTTTCAAAGAAGAGTTGATTGATTCGTTCTTCAATTTTATCGATATTTTGATTGTGGAGGACGGAAATCTTGATGACATCAGTTGGCAGCAGGTCCAGCTCAATCTTTTCTTCAAGGTCAGTCTTGTTAAGCAGGACGATGCGATTGCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //