Array 1 52487-53158 **** Predicted by CRISPRDetect 2.4 *** >NZ_CASL01000045.1 Salmonella enterica subsp. enterica serovar Agona str. 33.A.05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================== ================== 52487 29 100.0 32 ............................. GCGACTGGCTGGTCAGCACGCCGTTAGTCGCC 52548 29 100.0 32 ............................. AAATTGTCTGATAGATTGGCAAAAGCGATGGA 52609 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 52670 29 100.0 32 ............................. CCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 52731 29 100.0 32 ............................. GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 52792 29 100.0 66 ............................. TTTCCAAAAATCACGGCACCCGGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 52887 29 55.2 32 NNNNNNNNNNNNT................ GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 52948 29 100.0 32 ............................. TTTCCAAAAATCACGTCACCCGTTGTGATCTG 53009 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGACGGCAA 53070 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 53131 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================================================== ================== 11 29 94.1 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69445-70720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CASL01000045.1 Salmonella enterica subsp. enterica serovar Agona str. 33.A.05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================== ================== 69445 29 100.0 32 ............................. GAGGCGCTGGCCGCGCTGGCCGCAGAAAAATT 69506 29 100.0 31 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCT 69567 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 69628 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 69689 29 100.0 32 ............................. GGCACCTGCCGGGACATGACCCTGCCGGAGCT 69750 29 96.6 58 ................G............ GTCATTTGCTTGTTAATGGCGCTTGCATTANNNNNNNNNNNNNNNNNNNTCCGGAGCT 69837 29 100.0 33 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAACG 69898 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 69959 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 70020 29 100.0 30 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGG 70081 29 100.0 29 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCC 70142 29 100.0 28 ............................. TTTTATAACGACACTAAAACCCGCCAGT 70203 29 100.0 32 ............................. ATTTTAACGGCAAGGTCGACAGGAGATACCAC 70264 29 100.0 31 ............................. ATCATCACCCAGGCATTTTCTGGAATATGAA A [70286] 70325 29 100.0 30 ............................. ATCCCGATGATCATGAATATTTCTGGCGCC A [70346] 70386 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATAAATAT 70447 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 70508 29 96.6 32 .....T....................... GTTAACCAGGGGTTTTTCCCCACTATTTCGCG G [70535] 70569 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 70630 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 70691 29 93.1 0 A...........T................ | A [70717] ========== ====== ====== ====== ============================= ========================================================== ================== 21 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //