Array 1 2941051-2941259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIE01000001.1 Xanthomonas albilineans strain LKA070 Xal-LKA070-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2941051 28 96.4 32 A........................... AAAAAGGATCACCTTCCGCAGGGTCGGGCGAC 2941111 28 100.0 32 ............................ TTACCGACATTGGCAGCTTCTCGCGCGAGAAA 2941171 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 2941231 28 96.4 0 .........................C.. | T [2941255] ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGGTGATCGCATGAACGCTCCAATCACCTAAAAAGCCAAGTGGTTTTTGCACATTTTTTGCTTCTTTTTAGAACAGGCCATCAATGCCCCGCAAAGCCCCCACACCCTGCCGCCATCCTGGTTGCGGGAAGCTAGTTTCAGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGACGTGGCAGAAACTGCGCGCCTTCGTCATGCAACGCGATCAAGGACTATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAGACGGCCCAGGAATCGCATCAGGGACGCGAAGGTGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : ATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTGGACAGAACCGTGTCAGAGCTAAGCGTTGCAAGGGACTACAAGGCTGACTTGGCGCAGATCGAACAGATCGATGCGACGCCATGGACTGCGGCAAGTCACGCGGACATGACCTCAGAACTGAAAACCTATGCGCGGTCGTAAACCTCTGCCTGTAGCAATCAAGAAGATCAAAGGCACGCTGCAAAAATGCCGGACCAACCCGCATGAGCCCCGTCCCGACGGGCAATTGGGTGAGCCACCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACGTATGCGGTAGAGAACGCACCACTCGGTTTATTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACTGCGAGGCGCTGGCAA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3260943-3261836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIE01000001.1 Xanthomonas albilineans strain LKA070 Xal-LKA070-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3260943 31 100.0 35 ............................... CGCTCGGCAGTCGTCGCACCGCTGCCCATCCCCAG 3261009 31 100.0 35 ............................... TAAATATTCGCTCTCCGCTGGGATCGGTGTAGCGG 3261075 31 100.0 36 ............................... ATTCGATGATCCTCCGGAAGCTGATTACCCATACCG 3261142 31 100.0 37 ............................... ACGATATCTTCAATGAGTTGCGCGCTCGCGTCGGTCG 3261210 31 100.0 36 ............................... TTGAGCGGAAATGAAAAGCTGGAAATTATTGCTAGA 3261277 31 100.0 36 ............................... TGCTGTTTCGGCCCTCCGCGCGAGAAGGCGGAGAGG 3261344 31 100.0 35 ............................... ATCTGCCACAGCAGAGATTGCAGACAGCGCAGCTT 3261410 31 100.0 35 ............................... AGCGTCTGGATTTGATCCGCAAGCAGACGGTGCGA 3261476 31 100.0 35 ............................... TATCCGAATCTTGATGGCTCCACCACCGCATCATC 3261542 31 100.0 35 ............................... CCCCGCGCCCAACACAGCAGCCTGCCGCGCAGGCA 3261608 31 96.8 36 ...................A........... TGCTGCTCTGTTGTCGCCTGGTTCGCCCGCTCCAGG 3261675 31 96.8 35 ......T........................ CGGTTGCAGCGCGGCAGCACCCCCGATTTTGATTG 3261741 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3261806 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ===================================== ================== 14 31 98.8 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3449916-3450424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIE01000001.1 Xanthomonas albilineans strain LKA070 Xal-LKA070-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3449916 28 100.0 32 ............................ CTTCCTATCGGCATCACCCATGCCGTGTTACC 3449976 28 100.0 32 ............................ TCGTGGCCTTCGTGCATCTGTTCGGGTGTCAG 3450036 28 100.0 32 ............................ AACCCCCGTGTCCGCGGCGGAATCATGGCCGG 3450096 28 100.0 32 ............................ AACACCTCGCCAAGAAACCCAAGCTCCATCGT 3450156 28 100.0 32 ............................ AAGTACTACACCGGAGAGGACCGACCCGGGAA 3450216 28 100.0 33 ............................ AGCTGCGCCTGGTTGTGATCCTCGCGCTCCAGC 3450277 28 100.0 32 ............................ AATTCCAAGGCCAAGACTTCTGCGCGATAGAT 3450337 28 100.0 32 ............................ TTTGACCAAGATTGCATTGCTCGCCGCTACGC 3450397 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACAAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGACCCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCTTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : AACGAGGCACAGCAGCGCGGCTGACTTGCTCAGGTTGAACCGCCCCGGTTTCCGCGGAGGCTCAACACTCTGAGAGGATTGAGCCATGAGCAAGTCGAACAAGTTCTCGCCCGAGGTACGCGAGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACTACCGGCAACTCGCCAGTCAGACCGCCGCCGTGGCGGCCTGACTTAAACCAAACAGCCTCCGCGGAAACCGGGGCGGTTCAGACTGCCGTTTTGTAGGAATTTTCTTACAGTGTCGCCTCCTATCAACACGACACTGGCAACCAGATTTTTGAGCATCCCATGTCTTGCGTTCTGTTGGCGGCGCTACTTTCGATCTACCTGCATGCAGGCAGCAACGTCGTCAAAAGTCCATCCGTCATCGTGGCGACACGATGCCTGCGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //