Array 1 461-3481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXA010000007.1 Erwinia amylovora strain 1478-2 Ea_1478-2_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 461 29 96.6 32 N............................ GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 522 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 583 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 644 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 705 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 766 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 827 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 888 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 949 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 1010 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 1071 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 1132 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 1193 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 1254 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1315 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 1376 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 1437 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 1498 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 1559 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 1621 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 1682 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 1743 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 1804 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 1865 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 1926 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 1987 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 2048 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 2109 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 2170 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 2231 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 2292 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 2353 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 2415 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 2476 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 2537 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2598 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2659 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 2720 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 2781 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2842 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2904 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2965 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 3026 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 3087 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 3148 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 3209 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 3270 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 3331 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 3392 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 3453 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : GGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGTATGCGNN # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12945-13273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXA010000007.1 Erwinia amylovora strain 1478-2 Ea_1478-2_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12945 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 13005 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 13065 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 13125 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 13185 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 13246 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14509-8594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXA010000022.1 Erwinia amylovora strain 1478-2 Ea_1478-2_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 14508 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 14447 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 14386 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 14325 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 14264 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 14203 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 14142 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 14081 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 14020 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 13959 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 13898 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 13837 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 13776 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 13715 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 13654 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 13593 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 13532 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 13471 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 13410 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 13349 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 13288 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 13227 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 13166 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 13105 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 13044 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 12983 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 12922 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 12861 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 12800 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 12739 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 12678 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 12617 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 12556 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 12495 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 12434 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 12373 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 12312 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 12251 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 12190 29 100.0 31 ............................. ACAAAAGACAACACCCCCTTACCCCCCCACG 12130 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 12069 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 12008 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 11947 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 11886 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 11825 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 11764 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 11703 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 11642 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 11581 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 11520 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 11459 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 11398 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 11337 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 11276 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 11215 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 11154 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 11093 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 11032 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 10971 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 10910 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 10849 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 10788 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 10727 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 10666 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 10605 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 10544 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 10483 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 10422 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 10361 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 10300 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 10239 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 10178 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 10117 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 10056 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 9995 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 9934 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 9873 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 9812 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 9751 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 9690 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 9629 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 9568 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 9507 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 9446 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 9385 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 9324 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 9263 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 9202 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 9141 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 9049 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 8988 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 8927 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 8866 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 8805 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 8744 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 8683 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 8622 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 97 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //