Array 1 1991-2940 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QNPX01000507.1 Xanthomonas oryzae pv. oryzae strain YN38 scaffold506, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	===============================	====================================	==================
      1991	    31	 100.0	    35	...............................	CGCCAATGAAAACCTGCATCTGCTTCCTCACGACT 	
      2057	    31	 100.0	    35	...............................	AGCAGTACCAGACGCAGTTGCAGCAGTACGAAAAC 	
      2123	    31	 100.0	    34	...............................	ACAAGAGCGCAGGCGCGGGACGCCGGCGCATTTC  	
      2188	    31	 100.0	    35	...............................	ACCCGACTCGGCACACCATCCACACGCCGTTCAAC 	
      2254	    31	 100.0	    35	...............................	GGAGGTATGTGTGGGGGTTTGGCTCCGATATCATC 	
      2320	    31	 100.0	    34	...............................	TACCGCGAACACCCGGAAGCACAGGTCATTACAG  	
      2385	    31	 100.0	    35	...............................	CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 	
      2451	    31	 100.0	    33	...............................	ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG   	
      2515	    31	 100.0	    36	...............................	ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC	
      2582	    31	 100.0	    34	...............................	CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA  	
      2647	    31	 100.0	    35	...............................	TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 	
      2713	    31	 100.0	    34	...............................	ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC  	
      2778	    31	 100.0	    36	...............................	GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC	
      2845	    31	 100.0	    34	...............................	CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA  	
      2910	    31	 100.0	     0	...............................	|                                   	
==========	======	======	======	===============================	====================================	==================
        15	    31	 100.0	    35	GTCGCGTCCTCACGGGCGCGTGGATTGAAAC	                                    	       

# Left flank :   GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC
# Right flank :  CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGTCCTCACGGGCGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [5,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.30,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.37,0.64   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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