Array 1 70412-71107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHQ01000012.1 Lacticaseibacillus rhamnosus strain Lrh9 Lrh9_contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 70412 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 70478 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 70544 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 70610 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 70676 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 70742 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 70808 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 70874 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 70940 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 71006 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 71072 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.7 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : GGGTGATGCTGACAAGATCAAGACGGCTGTGTCTCAGGTAGATGTCAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 32-464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHQ01000037.1 Lacticaseibacillus rhamnosus strain Lrh9 Lrh9_contig00037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 32 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 98 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 164 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 230 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 296 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 362 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 428 35 83.3 0 .......................AA.C...-..T.A | AA [449] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : CCGAGCTTGCGGCCAATATCAAGCTATATGCG # Right flank : AAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 357-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHQ01000098.1 Lacticaseibacillus rhamnosus strain Lrh9 Lrh9_contig00098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 356 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 290 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 224 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 158 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 92 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : CAGATCAATCAGTTCAAGAGCCGCCTTACGGGCGACAGCTAGGCCTATGG # Right flank : CCACAGTGCCATTCCACAAACCCGACAGAAAGTCTCAGGTAGATGTCAGATCAATCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //