Array 1 153-584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKNG010000083.1 Paracoccus sp. XHP0099 NODE_83_length_5489_cov_35.164304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 153 36 100.0 30 .................................... TACGGGCGCGCGATCTTTGCCGCTGATCCA 219 36 100.0 30 .................................... CGTATGGCTGGACGGTATGAAGGCGGAGGG 285 36 100.0 30 .................................... TCCGGGTTTTGAAAATAAGCAAAGCCATGT 351 36 100.0 30 .................................... CCTCTGGCCCAGCATTCGTGAGGCCAACCC 417 36 100.0 30 .................................... CTATGCCACTCTACTCCGCTGCCGTGCCGA 483 36 100.0 30 .................................... TCATTAGCCACCTAGCCACCCCGGAGGGTA 549 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGCGGCTGGACCACGGATTTTGAACAGCTACAAT # Left flank : TCGCTTGGCTCAAGGCAACCCTGACCGCTATCGCAAATGGCCATCCTCAGAGCCGCATTGACGACCTGTTGCCGTGGAACTTCAAACCGTCAAGATGAGGCCGCTGTGCCAGTCAGACACCGCTTACTGCCCGCACGCCGCTGGTCCAAGCTG # Right flank : TTCGATCTTCGCGCAGAGCCCTGAAATAACAGGGTTTTGATGAAGGTCTGTTGTGGTATTTTCGTGCGAATCGCATCAGAACATCACCAATTGCTGCGGATTTTCTCGGGCCGATTTTCGGCCTTGATCCGAGAAATGAATAATATCGCGATACTGGCGGTCGGTAAAGTTGAGGATCTGGACGTCTCCGGCATCGGGCAGATGTCGCTCGATGCGGCCCACGCGAGTGGCAAAGGCTTCCTTGCCGTTCACAAAGCGGGCGTAGACCGAAAACTGACTGCGTTCGAAGCCCTCATCCAGCAGGAAATCGCGAAACCCGGTAGCGGCCTTGCGCTGTTGTTTGGTGTCGGTCGGCAGGTCGAACATCACCAAAATCCACATGAGACGATACCCTGATAGCTGTGTCGTGGTCGCGTTCATTTACCCAAACCGGCCAAAGTCAGCGGATCCGGCGGGGTCGGCAGCACAAGCGAGAGAGTTTCCGTTTCGAAACTCTGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCACGGATTTTGAACAGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGAATTTTGAACAGCTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 4521-3575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKNG010000075.1 Paracoccus sp. XHP0099 NODE_75_length_7087_cov_61.232040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4520 29 100.0 32 ............................. GCGTATGTCGTCGGTGAGCGCGGGCCAGAGAT 4459 29 100.0 32 ............................. TGTCGGGCCGCTCGGCAACCGATAGATGCTGT 4398 29 100.0 32 ............................. ACCCGTGGCGAGAAGATCGCTCGTGAACGCGC 4337 29 100.0 32 ............................. CTGAATGACCCCGCCCGCGTCCGGGCAAAGCC 4276 29 100.0 32 ............................. GTCGGAACTGTATGAGGCGCTTGAGACAGCGA 4215 29 100.0 32 ............................. CCGCAGGATAATAGTATCCATCACTCGAAACG 4154 29 100.0 32 ............................. GATCGCCCCATTTGGTGCAGAATGTAACCTGC 4093 29 100.0 32 ............................. GAACCTATCGGGGGCATGTGGTCGCAACGCGC 4032 29 100.0 32 ............................. ATGAGGGGCTTTTCGATCATGGCATGGCGGTC 3971 29 100.0 32 ............................. GGAATCCGCGTATGACGATGTATCAATGTCTG 3910 29 100.0 32 ............................. CTGGAGAGGCGGATGTGACGGCCCGCGCCGCG 3849 29 100.0 32 ............................. ACGCCGCGACCGTGGCAATTCAGCGCATCGCG 3788 29 100.0 32 ............................. GCCCGATAGTAATCCTCTATCGTCAGCGTCGA 3727 29 100.0 32 ............................. GCAATCGGGATGCTGAGCGCGAGCAAGCAGGC 3666 29 100.0 32 ............................. ATCACGCCCAAGGGTATGACCAGGTTGGCGCA 3605 29 75.9 0 ......G..C..TT.......G..G.T.. | GC [3582] ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 CTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : ATGCCTTCCGCCGCGCGGGCCTGCTGCAAAAGATCATCCCGCGGATCGAGGAGGTGCTGTCCGCGGGCGATCTGCCCCGTCCCGAAGCGCCACCCGAGGCCGCCGGCCCGGCCTTTCCCGACGACCCCGCCGGCGGGGACGGGGGCCATCGCGGATGATGGTGATCGTCCTCGTCAACGCCCCTCCGCGCCTGCGCGGGAGGTTGGCGGCCTGGCTGCTCGAGATCCGCGCCGGGGTCTTCGTCGGCGATTATTCCGCCCGCACCCGAGCGCGGATCTGGGACCAGGTCACGGCTCATATCGAAGAGGGCGATGCGGTGATGGTCTGGAAGGCGCCGACGGACCAGGGCTTCGACTTCGCCACGGTCGGCCGCAACCGCCGCATGCCGGTGGATTTCGACGGGCTGAAACTGGTCCAGTTCCTGCCCGAAAGCAGCGGCGGAAATCGGTAGGGAATTTGACTTTCCGTTTCTACCGGCAGATCAATGGCTTCCAACAAGA # Right flank : AAACAGGCGAACCGCGACCAGATCATGAAGGTCGTGGGGTCCCCGCATTCCGCGGAGCCCGGGAGGTACCCGTCGCCGGCTATCGCCGCGCCCTGATCGCCTGGGCAATCCTTGCGCGCCTGGTGCCATCGGCCTGATCGGTGGCCCAGGCGCAGAGTGCAAGCCGGGCCGGGGCGGTCAGGCAGGTCACGGGCGCGGGGCGACCGGTCAGGGCAGCCTGCAGGCCAAGGGTGTGCGCCTCGTCACCGATCTGCGGGCCTCGGGCGAGAACGCCCCCTCCCACCGGGTCCTGGTCGGCCGCGCCGAAATCGGCGCCGCATGGACGAAGAAATCGAACGAGGGCCGCGAATACCTGGGCCTGAAGCTGGACGATCCGAGCTTCGCCGCGCCCATCTACGCCAACCTCTTCGATGACGAGGACGGCGAGGGCTACAGCCTCATCTGGTCCCGCCCCAACACCCGCCGCGGCGACTGATCGCCAAGGCAAAGGCCCCGGTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //