Array 1 284445-285388 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPTL01000001.1 Escherichia coli strain ECAJ6 NL36_S36_L001_R1_001__paired__contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284445 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 284506 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 284567 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 284628 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 284689 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 284750 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 284811 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 284872 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 284933 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 284994 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 285055 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 285116 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 285177 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 285238 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 285299 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 285360 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 311088-312946 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPTL01000001.1 Escherichia coli strain ECAJ6 NL36_S36_L001_R1_001__paired__contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 311088 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 311149 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 311210 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 311271 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 311332 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 311393 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 311454 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 311515 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 311576 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 311637 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 311698 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 311759 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 311820 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 311881 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 311942 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 312003 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 312064 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 312125 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 312186 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 312247 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 312308 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 312369 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 312430 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 312491 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 312552 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 312613 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 312674 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 312735 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 312796 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 312857 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 312918 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //