Array 1 12802-12073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGFX010000046.1 Streptomyces solaniscabiei strain FS75 NODE_46_length_57956_cov_161.430839, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 12801 29 100.0 26 ............................. TGGCGATCGCGCGGTTTCCGGTCTCA 12740 29 100.0 32 ............................. CGGACCCGAATCCAGGTGCCGGCCGAGTACAG 12679 29 100.0 32 ............................. GGCAGCCCAGGGGCGGCGTGTTCGGACCACCC 12618 29 100.0 32 ............................. CATCGTCTCGGAGGGGTACCCCACGATGGCGC 12557 29 100.0 32 ............................. GTCAGACCCACCCCGGCCGCGGCGGAGTCGGC 12496 29 96.6 32 ............................T CTTCACCGGCACCCGGAGCTGATCCCGCAGGT 12435 29 100.0 32 ............................. CGGCGGCACGAACACGTCACCAACGCGGCGTT 12374 29 100.0 31 ............................. CCGTGAAGGCGAGCCCCTCCATCTCGGTTGT C [12358] 12312 29 96.6 180 .......................A..... CAACTACGGTGGTGCCTTGAGGACGCCGTCCGCGCCCGCTGGCAGCCCCACACCCGTGCCCAGGCCCGCAAGCAGGCCGCCACCAGTACTAGCCTGGTCCTAGACACCCGGGCCAGCTTCGGCTTCACCGCAGCACCCGGCACCACCGACGACGCACGCATCCGACACCTCACCCTCGCC GT [12283] 12101 28 69.0 0 ....-..............CCCGCC..TT | A [12084] ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 10 29 96.2 48 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGGGGGTGGCTTTGCCGATGTCGTGCACTCCGGCGAGCCATACGGCCAGAGCGCGGGCGTCCGGCTCGCCCTGCGGCAACGCCTCGGCCACCAGCCTCCGCACCCCTATGGGCAGCCACTGGTCCCACAACAGCCCGGCAACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCATCGGTGTCACGGTCGTGCTTGGCCCACACCGACCGTGCCGGCCCCCCGAGCCGACGCAGCAGGCCGACATGGGCATTCCCCCCAATGCTCATGAGGGATTGATACAGGCAGAGCGCCCCTGCGGGCGGCAGAATGAGCAAATAGGATGATCCACAGACAGGGGGCGCTGGCCAGCTACACGGTGTCCGGCTCACCACCCCGATCACTCGGAATCCCTAGCATTTACCGGATGTCATTTAATGTACTTTTTGCCGGAATCTCCAATGCTTGCTGACTTCATGCTTTCCCAGCGCTAAACCTGCAGGCCAGGCAGT # Right flank : CGACGCCCAGGACCAGGGCGCCGGCGAACAGCAGCTGCGGGCGCTCGCGGCCGAAGCGCTCGGCGAGGTCTACTTCCGCGACGGCGGCCGCCGCGCCACCGGCCTGGGGGTCGAGTTCACGGATGTCGAGCACGTGGAGTTCGACCTGTAGAGCTGGAGTGACGAAGCTCGCTCGTACAGGCGATCATGGTCACCACGGCCACGGCCTTCTCCTCTGCATGCGAGGAAGGTAAGGGCAGTCTCTCGCCCGCCACTGACAACGAGTCACCCCGAAGCCGAGAAGGGACGGGAGGACCGGGCGGCCGGGCAGGAGACGTAACAGCGGATGCGTCGCGCTCCGGCCGCCCGCAGCCTCAGTCACGACGGCTCCCGTACTGGCTTCTAGCTGCCGGCCCATCAGTAAGTGCCGCTAATCTGTGAGTTGTTCTCTTCGCCGAAGCTTGGTAGGGCCGCCGGCGGAGTGCGGGTCTTCACACTTGGGAGGCTGAGCGGACGTGGGG # Questionable array : NO Score: 4.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-1.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22513-22663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGFX010000046.1 Streptomyces solaniscabiei strain FS75 NODE_46_length_57956_cov_161.430839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22513 29 100.0 32 ............................. GGACCTTAGCGATCACCAGTTACGGCGTCACC 22574 29 100.0 32 ............................. GTCGACCGCAACATCCGCCAGTCGATCCCGAT 22635 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCGTCAACCAAGCCGGCCCCGACGACTACGGGGACGGGGTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGACTACGCGGCTTCCTCACACGCTGGCTGCTGGAAATCTCCGCCGGCGTGTTCGTGGGCAACCCCTCTGCCCGGATCCGCGACGTGCTCTGGGACGAGGTCCAGCAGTGCGCGGGCCAGGGCCGCGCACTGCTGGCCCACACCACCAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCGCCGCCCCGACCCGAACACACCCACCCCCGGCCCAGCACCCAGGAACGGGCCACCACCTGGCTGGAGCAAGGCTGCCAAACGCCGCCGCTTCGGGAGAGGCTGATGGATCAAAGTTCACCTATGTCCCATTTGTCGAAATCAAAGGCAGTGCTCGAAAACCGCCTCAGGCGTTAGCAAACCTGCAGGTCATCCAGT # Right flank : CCAGCGCCGGGGGCGGCGGTGAAGCCGAAGCGAGCGCGGGTATCGATGACAAGTCCGGCGGTGGTGGCGGCCTGCTTGCGGGCCTGGGCGCGGATGCGGGGCTGCCAACGCCGGCGTACGGCGTCCTCGAGGCGCTGGGCGAGGTCGGCGCGGGGCCGGCGGATTTGGTCCTTCACGTAGCGCTCGACGGTGCGCTGCGAGACGCCGAGCAGGTCGGCCACGGCGCGGGTGCCCTTGAGCTGCTGGACGAGGTAACGCATCTGCGCGCCGGGCGACTTGGGGATGGGGCGGGTGAAGGCCTGTTGCACGGCGCGGTCGAGGCCGTCTCCGATGATGCCCATGCGGGCTCTCCATTCATGATCGGCTGTGCGGGCCGAACCAGTCCACGGCTTCGCGCAGGAACGCGGCCGCGTCCGGCCAAGCCAGCGGGACGAGACCAGCCGGCACATCACCTGGCGCAGCGTGACACCGTCCGACCGGCGGCCGGCGAGCCGTGCGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 215902-212164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGFX010000007.1 Streptomyces solaniscabiei strain FS75 NODE_7_length_215927_cov_68.204992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 215901 29 100.0 32 ............................. AACGTCGTGACCGGCGTCGGGTGGGGCTTCGG 215840 29 96.6 32 .............T............... CCCCTTCCGGGTCATGGGTGAACAGAGCAGAG 215779 29 96.6 32 .............T............... CTCACGCCCCACCCGGTCCGGGTCTACGCCGA 215718 29 93.1 32 ...........G.T............... AGCCAGCCGATCGGTGGGATGCCGGGCCGGCG 215657 29 96.6 32 .............T............... GACGAGTGGACCGTGACCCCCTCGGCCCCCGC 215596 29 93.1 32 .............T.A............. CAGCCGCGGCGGACCACCCGGGCGGAGCGCAA 215535 29 96.6 32 .............T............... ACCCACATGACCGAGCCCACCGACAACGCCCC 215474 29 100.0 32 ............................. GGGGGATCGGGGTCCTCCCGGCGGCGCCGTAG 215413 29 96.6 32 .C........................... GTCCCGATCCCGACCGGGGCGAACGTCACCTG 215352 29 96.6 32 .C........................... ATCGCGGCCGAGTTCGACCGGGCCGCGACCGC 215291 29 96.6 32 .C........................... GCTAACGCGGCGAGCACGTGGAAGCTCCGCAT 215230 29 89.7 32 .C.........GT................ TCGTCGACCAGGGCGGCGAGGATCGCCCCGTC 215169 29 96.6 32 ...........G................. CCTTCTTGGGGTTCAGGTTCGAGACGAGCCGG 215108 29 96.6 32 ...........G................. TGGTTGGGCATGGGGAGGGTGAGGCCGTTGAC 215047 29 96.6 32 ...........G................. AACCTGCCCCGCGCGGACCACTGGGATGCCCG 214986 29 100.0 32 ............................. GACGGCGACGTGACGCTGACCGTGCAGCCCGC 214925 29 100.0 32 ............................. GCCTGCCGGGGCGTGGCCGCCTGCGCGACGAC CA [214911] 214862 29 96.6 32 .............A............... TGGATGTACCAGCTCTTCGACGTCATGCAGGG 214801 29 96.6 32 .........A................... TGCTCCGCGCCCTCTTCCTCGAAGGACTCGAA 214740 27 89.7 32 ....C...........--........... TCACCCGACGTGATCTTGCAGCCGAGGAACGT 214681 29 96.6 32 ...............A............. GCGGCCCGCATCTGGGCGAGGATGCCGGACAC 214620 29 100.0 32 ............................. AGGGTGTCCATTGCCTCGTCGCCGTTCTTGGC 214559 29 100.0 32 ............................. GAGACGCTCGCCGTGGAGATGTGCCAGGTGTG 214498 29 89.7 35 .........A.G...........C..... GAGATCCCCAGGTCGCAGTGCTCGCAGAAGACCTG 214434 29 93.1 32 ..C.C........................ TACGTGGCCCGGGACAGCGACGGGGCCCGGTG A [214428] 214372 29 89.7 39 ..........................GGA TGGTCCCGCCGCCGGCGCCACCGCCTCCGATGCCGATAT 214304 28 89.7 32 ........T.....-..........C... ATCGCCAAGGTGTCAAGGCATACGGTGGTCCA 214244 29 96.6 32 ..A.......................... AAGTGGGACTCCAACTGGCAGGCCGGCCACCC 214183 29 96.6 33 ...T......................... GTCACCCAGCACTCCTACGACCCGCTACGCCGC 214121 29 93.1 32 ..........G...T.............. TGCTCCAGGTTCGTGCCCCAGAAACGCTGGCT 214060 29 100.0 32 ............................. ATTTCCCGCAGTGCCCGGTCGAGTTCGTACTG 213999 29 100.0 32 ............................. GGGTTCGTCCGGGTGTCGGCCTGGTAGCCCGC 213938 29 100.0 32 ............................. CTCGTCGTGTACGTGCGCGGCGTCATACGGGA 213877 29 96.6 32 ..............T.............. CCCGAGCACGCGACGGAGGTGACGCTCGATGA 213816 29 100.0 32 ............................. GAGGAGCGCCGCGACCTCGCCCTGGCCACGGC 213755 29 96.6 32 ......T...................... GCGGATCTCAACGGGGCCCGTAAGGGGGCGTC 213694 29 86.2 39 .......T..................GGA TGGTCCCGCCGCCGGCGCCACCGCCTCCGATGCCGACAT 213626 28 93.1 32 ........T................-... ATCGCCAAGCTGTCGAGGAATACGGTGGTCCA 213566 29 89.7 32 ..A.................A..T..... ACCGATCCCCGCGACAATGGCCTGTACGTCAC 213505 29 96.6 32 T............................ AGGCGCAGGAAGAACGTCTTGCCCTGCCTGGG 213444 29 96.6 32 .........A................... GGCTCCAGGTCGCCGCCACTCTTGCCGTTGGC 213383 28 93.1 32 .C.......-................... CGAGGGGAGCAACCACCCAAAACAGGCGGGCC 213323 29 100.0 32 ............................. GACAACGGCAACTTCCAGTACCGGATCGTCCA 213262 29 100.0 32 ............................. CTGAGGCGGGGTACGCGAGTCGTACCTAGCAA 213201 29 96.6 32 .................A........... TGGTGCCACCGACACAACTGCCCTATGGGGCA 213140 29 96.6 32 ...........G................. GACGAAGCCGCCATGCAGGGCATCCACGGCAC 213079 29 86.2 32 ...............T.A.........TT GTCGCCGCGGCGCCGAACAGCAGTACCTCCCG 213018 29 86.2 40 ....C.........G..A.......C... TCGAGGCTGGACAAGGTCGTGTCGCTGGACGTCTGCTCCC 212949 27 93.1 32 .............--.............. CAGACGCCGTCCTCCGTGCGCAGCCACCGGAT 212890 28 96.6 32 ........-.................... GGCACGGAAGGTGCTCGGACTGCCGGACCCCG 212830 29 96.6 32 ...............A............. TCGTCGGCCATCATCAGGGCGGGGATGCTGTC 212769 29 93.1 32 ........T........A........... ATCTTGTACGGCGCCGTCTCCGCCAGGGCGGG 212708 29 93.1 20 A.................A.......... GCAAGATCCGCTCGCCGGGT Deletion [212660] 212659 29 89.7 32 T................A.......C... CCTCCGTCCAGGTCGCGGCGGTTCTGGTACAA 212598 29 96.6 82 ............................T ACCCCGCCCCGTACCCGGCCACGGCGATTCCGGCCGCATGCTCCCGTCCCTCGTAGCGGGTCGCCACGTGGGCCAGGCCGGT 212487 29 89.7 32 ..............TTG............ GACGACGGACTCATGCGCGAGTCGCGGGCGAT C [212478] 212425 29 96.6 32 ............G................ GACGGGGACCGGTCGGCCTGGTCGCCCCTGGT 212364 27 82.8 30 T...........A......A.--...... AGGGGAACAGAAGGTACTTTGAGCGCTGCA 212307 28 82.8 24 ..-..G.....G..........C..C... CGTCCGACGGCAGGAGATCGCGTT GG,C [212280,212285] Deletion [212256] 212252 29 89.7 31 GC...............A........... GGCCGGATCTACGGCTGGGGGCCCAGGCCGC 212192 29 93.1 0 .........A..............C.... | ========== ====== ====== ====== ============================= ================================================================================== ================== 61 29 94.7 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TAGCGATCACCAGTTACGGCGTCAC # Right flank : TGGTTGAGCGTGATGTCGGCGCCCTCGGAGGGGGCTGGGGGAGGAGGTATCCACCTCCTCCGGGGGGTGTGGGGGGTGCGAAGCGGATCGCGGGTTTTCCGCATTCCGGCTGTGACCAGGCGAAACGCGGGTTTCCCGCGATCCGGAGGGCTGGGAATCGCGGATTTCCCGCACTTCGGTGCTGACCTGCTGTGATGCCGCGATGCCGAGATCGACGTACTGCTCGTTGTTCGCCGGGTTCCGGTAGACCCGGGTCACCCAGGTCGGGCGCTGCGTGGCTTCGTCGTAGAACGAGACGCGGCTTCGACCGCCGGATACGGGCGGTGTACCTGCGGCGGAGTGCGGGCGGCATGTATCCGTTGGCCGCAGGGGCCTGTCGGCCCCGTGGCCGCCCCGGGAGCGGGCGCGGCGCGCGGCCGGGCGGCGGGCGTACCGCGCCGGGCGATGAGGGCGCGGCAGAACGCGACAGGCTGGGCGCGGCGGCTGCAGCGCGGCGCGGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [45-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //