Array 1 554281-552576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRA010000001.1 Desertifilum sp. FACHB-866 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 554280 37 97.3 34 ....................................T ATTTTTGCGATGACTGTGGCGCTGAATACGAAGG 554209 37 100.0 45 ..................................... TTGACAGTCACGTCGTCCCGGTGCGGGTCGCCCCAAGGAAAAAAA 554127 37 100.0 38 ..................................... TTGACAGTCACAGTGACTTCAATGAAACGCCTCCTAGT 554052 37 100.0 42 ..................................... TTGCAGATGTCCCGGTAGGTGAGCCGATTCCGGGGCGGACCC 553973 37 100.0 40 ..................................... GCTGCCAGTGGCCCTGGCAAAATTTTTCAACCTATTGGAG 553896 37 100.0 33 ..................................... GCTCCTGAGAAGAAGAATAAAATAGATTGCTAT 553826 37 100.0 36 ..................................... TGAATTAGTGGCCGCCGCCGATTTATTCAACCAATC 553753 37 100.0 35 ..................................... GATGGACCTTTTAGCCTTCCCTACGAGGTTTCTAG 553681 37 100.0 34 ..................................... CTCGTTCTGCTGCGGCGGCCTCAGCCCTCGGCTC 553610 37 100.0 34 ..................................... TGTTGCCAGCATCCCTCCTGTGAGGAATCGGGCT 553539 37 100.0 34 ..................................... CTTTTGTGGAGACCCACTGCGGTTTAGTCATAAT 553468 37 100.0 35 ..................................... TTGTGTTGCATGAATCCAGAATGCCCAGTAAGAGT 553396 37 100.0 33 ..................................... GCGGTATACCTGCCAGGGAGTGCGCCGCCCCTT 553326 37 100.0 34 ..................................... GGAACGCTATCGAAGAGTTCTGTCATATTTGCAA 553255 37 100.0 37 ..................................... ACGAAAAATTCATAGCAAGATTTTAATTAATGGACTT 553181 37 100.0 36 ..................................... TCACAAACTCGCCTCGATGAGCGATCGCGTAAACTG 553108 37 100.0 34 ..................................... AATTGGAAATTTCTGAGGATTCCATTATAGAAAT 553037 37 100.0 37 ..................................... ACAACCGAAAACCACGATTCTCTGAACAGACAATCGG 552963 37 100.0 34 ..................................... GCAAGAGGATATCGCTCACTCACTGCGCCAAACT 552892 37 97.3 34 ....................................T GAGTTGGGCGGCATAGGGGCGCGGATCGGCTTGA 552821 37 97.3 34 ....................................T TTGGAGTGCATCCGGGCTGCACTTCTGATCGAGC 552750 37 97.3 33 ....................................T TCCTTTTGAAAAAATGGCAGGTGCATCTGCCCC 552680 37 100.0 31 ..................................... GTACTACACTCACAAGGTGTAGCCCATTGAA 552612 37 91.9 0 .CAT................................. | ========== ====== ====== ====== ===================================== ============================================= ================== 24 37 99.2 36 GTTATACTACATCGTTAAGGTGTAGCCCCATTGAAGC # Left flank : GCAGTTGGGTTTTCCCCAAGAGGCGATAGAGAAGGTGGAGGAACTTTCGGACGAACAGGGGCGAAAGTTAAGTCAGTTTGATGCGTTCCAATTTCAACGGCGTCGCACTCAAGGACAAGGTTCTAAAAGTTCGGATCGGGGATACTGGTTTCGGTTAACTTTTAAAGAACCCCAAAAAGGACCGATTGCTTTGGGCTATGCGGCTCATTTTGGTTTAGGGACGTTTATCCCAATCCGATAAATCGCTCTTGCTGCGCGGAGGGGTGGGTGTAGAATGAATGCTGCTCGACAATATGCCCCAAACCCTGGAATAATAAGGCTGTGGGCGATTTTACAGAAATTTTGCCTCGCGCAAATGCCAAAATGCTTATCTGATAAGCGTTTCGTCGTTTCTGTATTTTCTATTTTCGGGCGATTATTTCCCAAAATGGACTTCTCCCCCCCTCGCCGCGCAACCGTACCTGGAAAACTCCATATCATCAGGCTTTCAGGTTGCCGCA # Right flank : AAGCAAGCAAGGAAGCCAGGAGCGAACCCCCTAGATAGAGATATCCTAAAAAAGGCAGAGGTCAAACTTTGCCTTTTTCCGTTTGGGGATAGACTTGTGCAACCCGTAGACTTTACCACCCTCACCGCCGTTTACACAGACTTGCAGGCGAACTGGCTGCCCGCCCGTCTCGAACAAGTTTATCAGCGCGATCGCCATACCATCTGCCTTGCCCTGCGAACCTTTAAACAGCGCGGCTGGCTGACCATTTCGCGCCATCCCCAAGCCGCCCATCTGTGCATCGGCGATCCGCCCCCCAAAGCGCCCGACACCTTCACCTTTAGCGATCAACTGCGCCACCAACTCAACGGGTTAGCCCTGGTTGCCATTACCCCCGTTGCTCCGTGGGAACGCGCCCTAGACCTGCAATTTGCCAAACGCCCCGGAGACGCCATCCTCTGGCATTTGTACGTTGAAATTATGGGCAAATATAGTAATATCATCTTGGCAAATGCCGATAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACTACATCGTTAAGGTGTAGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 383661-386117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRA010000002.1 Desertifilum sp. FACHB-866 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 383661 37 100.0 38 ..................................... GGCAAAATTTGAAGAGACGAAACGCGATCGTGCTTTTC 383736 37 100.0 36 ..................................... TATAGCGGCAGATGCTGAAGCCGGACAGATTATAAG 383809 37 100.0 35 ..................................... CATTGCTCAGTACGATACCCAATGCCATCCTTACT 383881 37 100.0 36 ..................................... GCATCAATGGCTGCTGAAGGAAGCCTTGGGTATAAC 383954 37 100.0 38 ..................................... GTTGCTAGGGATTCAGTGGACCGCTTGTCCAACCACTC 384029 37 100.0 33 ..................................... AAAAGTGATGTGCCAATCTCAAGCAACATTAGC 384099 37 100.0 35 ..................................... AGGCAACTGCTATGGCAACACGCAGCACCAACAAT 384171 37 100.0 38 ..................................... GCTAGAGCCTCTAAGCAGCTCAGCCGTAGAAGAATTTT 384246 37 100.0 35 ..................................... GGAATAGATCCGATCGCGCTTCCTATTTTGGTGAA 384318 37 100.0 39 ..................................... TATCAATATCATCAACAAAGCCAAACTCAAGCTTGGAAG 384394 37 100.0 36 ..................................... CGCCAAGTGCGATCGCTCCGTCATTAACATCCTCAA 384467 37 100.0 35 ..................................... GCTGCACAATCTGATGGCGTAGAGGCAGTATTGAG 384539 37 100.0 33 ..................................... AATTTCAAACAATTGGGAGTTAGACGTTGGTGT 384609 37 100.0 35 ..................................... GAAAAAAAATAGCCTCCATGAGATTTCAGGAAAGC 384681 37 100.0 35 ..................................... CCGGGCTTCAAAATGATATCTTCCACTCCATTGCA 384753 37 100.0 42 ..................................... AGGAGGAATTTATCGATAAAAATAATCCTTCGGCTGAGAAAA 384832 37 100.0 36 ..................................... ACAACACTGTGATGAAGATAAAGCTTTTGCTTAGAG 384905 37 100.0 47 ..................................... ATGAGTGCAGCCGACTTTTCCGTCCCGGAGATTGAGCGGAACCGGGC 384989 37 100.0 39 ..................................... AATACTATCTTGCAGAAGGTCGTCCAGTCCCTCCACAAT 385065 37 100.0 36 ..................................... TCAAGACTCCAAGAATTAATTTATAGAAGATTAGCA 385138 37 100.0 42 ..................................... TATGTGATGCCCGACCGGGGGAGGGTTAAAGATGCTCCTGTT 385217 37 100.0 34 ..................................... CTGATGGGAAAGATACCCCTATACATCCGATCGC 385288 37 100.0 34 ..................................... AACCCCAGGGATAGTTATCCCTATGCTATTTAGT 385359 37 100.0 33 ..................................... CGTGGATTTGGAATTTAATCTCAATAACAAAAT 385429 37 100.0 35 ..................................... CCTGAATTACAAGAACTCACTGGTGTTCGGAAAGG 385501 37 100.0 39 ..................................... TGAGTCACCCCCCGACGCGCCCCCGATGCCCAACGTTGG 385577 37 100.0 34 ..................................... ATAGATTGCCGTTGTCCCTCTGGACTGCCCAGAT 385648 37 100.0 35 ..................................... GGATTAACACCAACAACAGCACTTGCAGACATTAA 385720 37 100.0 35 ..................................... GACCCCAACGGAACCACAACGGCAGCAACACAATT 385792 37 100.0 35 ..................................... AGATGCTTCTTGAGATTCAAAGATTTGCTCAGGAA 385864 37 97.3 35 ....................T................ GCGTTGCTTTCCCGATATTTGCTTACAGCTTGGTT 385936 37 100.0 36 ..................................... AGCCATTACAGTGGGCCAGATAAAGCCCATCACATT 386009 37 100.0 35 ..................................... GCCGAAACTGAACTAATCCAGCGCGAGAAGTTTGA 386081 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== =============================================== ================== 34 37 99.8 36 ATTGCAATTTCATCTAATCCCTAATAGGGATTGAAAC # Left flank : TGTTTGTTGTGGTGTCCTACGATATCTCTGAGGATAAGCGCCGAACCAAGATTCACAAGATTCTCAAGTCTTATGGACAATGGGTGCAATATAGTATCTTTGAGTGTTCGCTGGAGCCGACGGACTATGCTAGATTGCGATCGCGCCTACAAAAACTGATCCAAGCCGACACCGATAGCATCCGTTTCTATTTCCTCTGTGGCTGCTGTCAGGGAAAGGTGGAACGTATCGGCGGCGAAATGCCTCGCGATGAGGTGGCTTTCTTCGCCTAAGTGCGCGAGGGGGAGGGTGTAGATTTTGCGGTTATCCCCAAGTTCTTCTATACCCTCTCTGGCTAAGGTTTTCAGCGTTTGTTCTCTCAAAGATGCCCGCGCCCTTTACAGGGTAAGGCTTTCAGGCTCTGAGGCTTGTCTGTTCCCCCAGGGTATGCTATCTTTGACTCATCGCTCGCGCATCGGTACCTGGAAAACTAAATACACCAAGGCTTCTGGGTTGCCGCT # Right flank : AAGAGAAAAGCATTAATCAGGGAGAAAGAAAACCTTCTCAAAACTTCCGGAGGCTGGGGCTTGACAGTGAAACAGGGAGCATGAACAATAAAATAGCTGGATTCTCTCCCTACACACCCAAGCCCGAACCTTGTTGATTGGTTTACATGAAAACTGAAGAAATCGAGATTCCCCATTCTCTGATCGTGGGATGCTGGCAACTGGACGATCGCAGTTGGACAAGCATCAGCGAACCCGAAATTGAACGCGCAATTGATACCTACTTAGCATTAGGGTTGCGCTGCTTTGATACCGCCGATATTTATGGACGTAGTGAAAGCTTAATTGGGCGGTTATTGAAAGGGCGAGACTGCACGATTTTTACCAAAGCCGTCTTTTTTGGAGAAGTCCCCACCCCTAGCCAAGTCCGTAACAAAATTGAAACCTCTTTACGCTATCTCAAGCAGAGTAGCCTAGATTGCGTGCAGGTTCACTGGCATAATCCCCAACTCGATTTTAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCATCTAATCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 460992-457499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRA010000003.1 Desertifilum sp. FACHB-866 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 460991 37 100.0 35 ..................................... AGGAACATATGCGACTAAATGAAAAATGGTATAGC 460919 37 100.0 34 ..................................... TATAGAAAATAATGTTCCTTTAGACCTCGGCTCT 460848 37 100.0 39 ..................................... ACCACAACTTCGTAGACGAACACCTGAAGAACCCAAGAA 460772 37 100.0 36 ..................................... CACGCGAGAAATTTCCGAAAGAGATTTTAGATAGTC 460699 37 100.0 36 ..................................... GAGGCTATCAGCCAAGATTTTGACTTTCTCAATACC 460626 37 100.0 38 ..................................... ATCAATGAGAATGGTACATCCATCGCCAACATCATATT 460551 37 100.0 37 ..................................... TGGACGCCCAAGGACGGCTTCACGGACAAGGAAACCG 460477 37 100.0 35 ..................................... TCGCGAGGAATATCGCGCTAACTACGATCGCTCGG 460405 37 100.0 36 ..................................... GCCGCTGACCTCCTTCTGTAGCTCGTTGAGCTTGAA 460332 37 100.0 36 ..................................... CGAGAAATCCCCAAATCGCTTCGCGCCCGGTCTAGC 460259 37 100.0 35 ..................................... CTGGCAAACCTTCAGCTTGCTCGAAAAATCGCCCA 460187 37 100.0 35 ..................................... TTTACAAGCGGGTTTCTCACTTAGAATCAGAGTTT 460115 37 100.0 39 ..................................... AAAAAAGCGGCCATTGACCGCTTCATTTTTTCTAATCTT 460039 37 100.0 35 ..................................... AGACTTTCCGGCTCCGGCTATCCCTCCAAAAAATA 459967 37 100.0 38 ..................................... TTTGCTGCCCTTGAGCGAGTGGCAAGTGGTGAAGAGTC 459892 37 100.0 38 ..................................... TTCGGGGAAGAATATTTAACCCCAGACGATTTCGTGAA 459817 37 100.0 35 ..................................... AGAAGGTTTAACTCGAATAGTTGTCCCTGAGCAGT 459745 37 100.0 34 ..................................... TTTTGGGGCTTATGTAGTCCTGCATTCGCTGATA 459674 37 100.0 36 ..................................... TTTAGGATTTATTATGGCTGCTAAAAAATCTTGCTC 459601 37 100.0 37 ..................................... AGGATGGTATCGAGCATTCTTGGGCGGGTAGTCGGAT 459527 37 100.0 50 ..................................... CTGAATTGAGGTAATGAAGCGATCTTCTCACCTCATAAGAGGTTGGTCGA 459440 37 100.0 35 ..................................... AAGATGGCCGCTTTTTTAACGCCAAACTGACACAC 459368 37 100.0 38 ..................................... GGCGATCGCTTTTTGTTGGGGCATCGTTGGGAGGCGGC 459293 37 100.0 35 ..................................... AAAAAACTGGTTAAGAAATTCCTTGTCCGCATTGT 459221 37 100.0 38 ..................................... GTAGCCCAAAACCGCAACGGTTGCGGTTTTACCGTATT 459146 37 100.0 35 ..................................... GGCGGGCTTCTGTGCAAAGGATACTGCTTGAAGTT 459074 37 100.0 33 ..................................... GGCAGGGTGGGGAAGCGGTGATGACGCTGATTG 459004 37 100.0 35 ..................................... GACGCTTTCATTCCACTCGCTCTCAACATCTGGAA 458932 37 100.0 34 ..................................... GAGAAGGGCTTCAAGTCTTTGGAGTCCGCAATCT 458861 37 100.0 36 ..................................... GTTTTTCTGCAACAACTCCTAATCCAATGATTTGAA 458788 37 100.0 44 ..................................... ACAGCAATCCGAATTAGTGCGCCTCCAAGCAGCAAATCAGGCAG 458707 37 100.0 35 ..................................... AGCATTGCCGAACTTTCAACGTACCCAATTCGTTT 458635 37 100.0 37 ..................................... CAGTCTTTGCCCTGAAAGCTCCGTGCAATGGCACAAA 458561 37 100.0 39 ..................................... AAGTACCATCCCGCCCCAGTAGGAAAACGCTGCCGCCAT 458485 37 100.0 38 ..................................... TGCAACCTGTTAACCAGCAGAAGTAAGCGTACGCCCAA 458410 37 100.0 33 ..................................... GAGCAGATCCGAAAACTTGCTTTCAAGCTCTCG 458340 37 100.0 34 ..................................... ATAACTTGCGCCAGACTGACATATAAAAGGATGG 458269 37 100.0 34 ..................................... CATCAAGCCCAGTAAGATTAAGCTGAAGTATCCA 458198 37 100.0 37 ..................................... AAATAGAAAGCCATGACTACTGAAAACTTTAAGCTTG 458124 37 100.0 35 ..................................... ACAAGCGTTGGTAACTCTGTGGTGGCGTCCGTTGT 458052 37 100.0 44 ..................................... AGCGCTTGGCACCACCTTGGGGAACGTGATCTGCGGTGGAAATT 457971 37 100.0 43 ..................................... AATTGCCGGAACTGTTTGGCGACCTGGTTGTCATGCTGCGCTG 457891 37 100.0 33 ..................................... GGCAGCCGTGCCAGGACTTCCACCTAAGTACAT 457821 37 100.0 37 ..................................... TTAAATCGCGCATGATTCACCTAAAATTTTGCACCGC 457747 37 100.0 33 ..................................... CTGAGCCATTGCCCTATCACCTCCTCTACCCAT 457677 37 100.0 35 ..................................... AGGTTCAGAGAAATGCGAACCCTGCGGATCTTAGA 457605 37 100.0 33 ..................................... TTGCCTGTCGCCTTTGGATAATCTCCAGGCTGA 457535 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 48 37 100.0 37 ATTGCAATTTCCTCTAATCCCTTTTAGGGATTGAAAC # Left flank : GTGGTGAACCCTGCGGCGAAGAGTAATAAAAGCAGTCCGATCTACGGAATGCCAATTTTAGAGGTAGACAAGGCAAAACATACGATTGTTGTGAAGCGCAGCATGAGTACCGGGTTTGCTGGGGTTGATAATGACTTGTTCTACAAGGATAAGACGATGATGCTGTTTGGTAATGCCAAGGATGTGATTGCCAAGCTCGTTTCGGAAGTGAAGCAACTCTAAGCCCAGAGTCGTTTGCGGAGGAAGGGAAGAGGGTTATCCCTTCCTCTGTTGGGCGCGAGGGGGTGGGTGTAGATTTCAGCGATTGTGAGGTAGCCGCTAGAAGCCCCCAGGCGCAAGGTTTTGAGTTGACTTGGCTATTCTTGAGCCTCGCGCACCTGATCTCACAAGGGTTTTAGCGATTTGGACTATCTTTTGTCTGGGCAATATGCTACATTAAGTTCAGCCTCGCGCAAATGCACCTGGAAAACTAAATATACCAAGGCTTTCGGGCGTCCGCG # Right flank : AGCAAAGACTTTTAGAAACACGATCGAACAAGCGATCGCCCTCAAGCAACCCCCTATAATCCCTAGAAGAGAGAGAACCCAAGAAGCTCAGAGAACCTCTCAAGCGCGCTGTCGCAAAAGCTGCTGCCATCTAACCTTCAGCGCCACATAGAGAGGAAATTGAAAATGCTCCAAAACCAGCCAACTCACAAAACTCAAATGAGAGAAAAACGTGAGAACCGTCCACACAACAGGGAACCAGTAAGCCGAACAGATCCCGCCACTTTGGAGCAAATCCCAAGGCGAGAGAGTCGTGCAATAGCTGTTTGGCATTGGGGGGAACGTGTGATACGCCAACCCAATTAACGTAGGGGGTAAGAAAACGAGCGCAATACCCACTAGCCAAATTTCCCAGGTTAAATCTAAATCTTCGCGACGATGGGTGGCTTTCCAGGTTTTCCCCGTCCATCGCCAAGAAAGCGGTTGGGAACCATCCACCACCTGAACTCTTTGTTTATCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCTCTAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 3431-123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRA010000012.1 Desertifilum sp. FACHB-866 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3430 37 100.0 35 ..................................... AGATCCTTGGACGGGTGGAATCTGCCAATACAAAA 3358 37 100.0 35 ..................................... TGATACCTATCAGTGGCTTTCTAGGGTTGAGAAAA 3286 37 100.0 34 ..................................... TCGGCTAGTTGAACGTAGTGCTGTTTATCGCTGT 3215 37 100.0 37 ..................................... CTCTTCCTTATAATCTGTCCGGCTTCAGCATCTGCCA 3141 37 100.0 43 ..................................... ATTGCCCAAATTTCTTCAATTGCAGAAAGCATCCCACCGGATG 3061 37 100.0 34 ..................................... TTTCGAGATTACTGCGATCTGATGAAAATCGATG 2990 37 100.0 36 ..................................... GCGATCGCTGCTGATGCTCGAAACGGCTGACCTGGG 2917 37 100.0 35 ..................................... TCTGCCTTACACTTACTACCCTGGTGATGAGTATT 2845 37 100.0 35 ..................................... TAGCTTTTCCTTCTCGGCATCCTCGCGTTTTTTGA 2773 37 100.0 37 ..................................... AGGCAACTCCTCTAGGGAGCAGCCCAGCGTTTGGCAA 2699 37 100.0 37 ..................................... AAGAGAATGTTGTACTGCCAAGGATCTTGTCCGGCAG 2625 37 100.0 34 ..................................... CGGTATATTGAGCATTTACAGACCGCGATCGCGC 2554 37 100.0 34 ..................................... GAATGACGGCTCGCATTATTAAGCCTCAGTGCGA 2483 37 100.0 34 ..................................... TGGCCCCTCTCAAGATTCTAAGCTCTGCGCTCAA 2412 37 100.0 33 ..................................... GGGAGTGAATACTAATGGAATTAATCTGGAATC 2342 37 100.0 35 ..................................... TACACAATTAATAATACCGAAACCTATTCTTTTAC 2270 37 100.0 34 ..................................... ATCTTCCTTTTCTATTCCAATTTCAGCCGACCTA 2199 37 100.0 34 ..................................... ACCTACCCTCTATCTAGCTATAGTTTTCTATTCC 2128 37 100.0 35 ..................................... ATTACAGGTTGATTTGGAAGTAGAGAAGGTATATC 2056 37 100.0 34 ..................................... TCAGTAACTTGATTTTACTCACCTCTAACATTCT 1985 37 100.0 35 ..................................... AATACTTGATTGATAAACTATTTGATCTTAAACCA 1913 37 100.0 34 ..................................... ATCAAATCAGAAGAATTAAAATTAGTCGAACCTG 1842 37 100.0 35 ..................................... CGCTGCTCGATCGAATCGAGTGCGATCGCCTAGCC 1770 37 100.0 38 ..................................... ACTACCCTATCCGTGTAACCAGACTTTAACTAAATATT 1695 37 100.0 35 ..................................... GGCTCAACCACAAAGGGAAAATTAACCGATTTAAG 1623 37 100.0 36 ..................................... TTGTCGAGGATGCGGCGCTGCACATCAACAGGTAAT 1550 37 100.0 41 ..................................... AGAAACCGGCGAGACAACCTGAAAAAATCCCAATGGTGGAA 1472 37 100.0 41 ..................................... AATAAACAGAAACAGGCTATCCCCTGGTAGAATCCTTGAGG 1394 37 100.0 34 ..................................... AAAAATGCAGATTCAGGTTGGTTCGATTGTCCGA 1323 37 100.0 39 ..................................... TTAGAAAATAATGTTGACCTTGATATCGAAAATTACCGG 1247 37 100.0 35 ..................................... CCCGCTGATATCAAGCATCAAGCCGATCAATTGAT 1175 37 100.0 34 ..................................... CTATAGTAAATTTTACTCTCCCTTCGTACTTCAT 1104 37 100.0 35 ..................................... TTGACTGGTTAAAGGGACTCCCTCAACGCGATAGA 1032 37 100.0 35 ..................................... ACAATTTACGATATTTTCTACGATGAGATTCATTT 960 37 100.0 35 ..................................... ATGATAAGAAGCCAACTGTAAGTTAGTTGTAATGA 888 37 97.3 37 ............T........................ ATAACTAGAGTTACCACTCCCCAGAAGGATCGGACAA 814 37 100.0 37 ..................................... TCTGGGTGCTGTGTTGTGCTGGTGAATCTGCGGCCGG 740 37 100.0 34 ..................................... CGGAAAACTTGCATCACCAGATTAGTGAACTGTC 669 37 100.0 36 ..................................... TGCTATACTCAAATTTGTAACCAAGGATAAAGAGAC 596 37 100.0 41 ..................................... GTTGACAATTTGACCGATAAACTCGCCGTTCTCATCAACAG 518 37 100.0 37 ..................................... ACGCCGAAAATGTGGATTCGCCTAATCCCGGCCTCAG 444 37 100.0 35 ..................................... CTCGATTTATGCGGCTAACTGGCAACGATTACAGA 372 37 100.0 34 ..................................... AGGAATTGGGGGAGGTGTAGGAGTTCCCCCACCT 301 37 100.0 34 ..................................... TTGAGCATAATTTAAGTTTTCTTCCATGACTAAA 230 37 100.0 35 ..................................... GGTCAGACCACAAAGGGAAAATTAACCGATTTAAG 158 36 94.6 0 ................................-.G.. | ========== ====== ====== ====== ===================================== =========================================== ================== 46 37 99.8 36 GTGGAAATTACTCCTAATCCCTATTAGGGATTGAAAC # Left flank : GCGGGAGTTGGTTGAGGAGATTGGCTACTGTCCGCCTCAGTTAGCTTTGTTTGGTGAATATGCCGATGCGCGGGTGGTGCGCTATGTCTTTCAAGGCGCGTTAGAGGTGGGGTTGGAGGCGCTGGTTTTGGGGGAAGGCTGGGATTTTGCCTTGCTGACGGTTGAAGAGATCCAAAAGGGCGATCGTTTTTCTCCAAAAGCAGGAGTCCGCCCCCTGGGTACGCCTCATCAGCGCATTCTGTTAGATTTTATCGCCCAAAATCGCTCTGAGTTGGCGCGGGGGGGTGGGTGTGGATTTTAAGTGTTTCTCCCAAATCGCCGAAGCCCTCTCTGGGTCTGGCTTGGCGCTGTTTTTATCGGGGTTGAGCCTCGCGCCCCTTACGCCACAAGGTTTTTAGCGTTTTCGACTATCTTTTTATTCCCCAAGATGCTATACTTCTTCTTGTGCCGCGCAAGCGAACCTCGAAAACTAAATATATCAAGCCTTCTGGGTGGCTGCC # Right flank : CCTCCTGCATGAATCATGAGACATGGGTCAGTTCATAGTTGAGCAAACCAGCAATCAAGTTCAAGCGCAAGCCAAATCGCCTTCTACGGTTACGATAACGTCCTGAAAAGATCCGAAAAATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATTACTCCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 295568-288710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRA010000004.1 Desertifilum sp. FACHB-866 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 295567 37 100.0 35 ..................................... TGCCCACACCGGCCTGGATTGTAATTGAGAGGTGG 295495 37 100.0 38 ..................................... CCTACTAATGAAGAGCTTATTTATCCTCATCTCCAGGA 295420 37 100.0 36 ..................................... TTACCTTGCTGCTCGGAGTAGGTGCGATCGCACTTA 295347 37 100.0 35 ..................................... GAGCTTGCTCAAGTGGATCGCGGGGGGCGGCTTGT 295275 37 100.0 35 ..................................... CCGCAAGCCTTCAGGGTCTTTCGTATCCTTCTCAA 295203 37 100.0 34 ..................................... CAATTTGCCGATTACCGCTCTGGTGATTGCGATG 295132 37 100.0 34 ..................................... CGGCATCTTGTAGAGCCTACCGCCGCGATGTCGC 295061 37 100.0 34 ..................................... TTGCTGACGTGCCTTTAGGGGAACCAATTCCAGG 294990 37 100.0 36 ..................................... GGTTCCATTGCCGTTGTCTGTGAACAACTCAGCAAC 294917 37 100.0 34 ..................................... CAACGCTTCCCCCCAAATGGCGAAAGCGCTAGCC 294846 37 100.0 35 ..................................... CAGCAGCGTAGCCTTTGCGAACAGCAGACGAAAAC 294774 37 100.0 34 ..................................... GAAGTCCACACCGCAACCGAACGCTACGAACGGT 294703 37 100.0 36 ..................................... TGATGACCGGGGTGGGATCATCTCCCTGGACAACTG 294630 37 100.0 36 ..................................... TTCCTCATTGCTTAAAAAAGCAATGAAATATGTTTG 294557 37 100.0 39 ..................................... GCGCGAGAGGCTTTGATATCTGGGATGAGCCAGCCTGAC 294481 37 100.0 35 ..................................... AAATTCTGCAAGAAAATGGAATCCAATACACAGCT 294409 37 100.0 37 ..................................... AGTTTAACTTGGGAATTCGATAACAAGAAAGAATCGA 294335 37 100.0 35 ..................................... CAATCAACTCCTCTTCAGTGGGTTCCAATTCAAAT 294263 37 100.0 35 ..................................... CAATTCCTAAAGCTTTAAGTCTTCTATTTGCTAAA 294191 37 100.0 34 ..................................... GGCTGATGAAATTCAATTTATTTCCGCAATTCGG 294120 37 100.0 35 ..................................... TTCTGAAGCCTGAGCAACCAAGCTGCTCAGTAGAT 294048 37 100.0 38 ..................................... CTCTTATCCTTAATGCTGGACGCGATCGCACTTTTAAC 293973 37 100.0 31 ..................................... GCCGCAATTCCGTCAATGGTTTCGGGAGACG 293905 37 100.0 36 ..................................... AAGCCCTATACCAATTTCCTGCTTACTCTCCCAGGA 293832 37 100.0 38 ..................................... CGGGAAGCCCGCGCCAATCAAGCAATTGAGGAATTGGA 293757 37 100.0 40 ..................................... GCTTGGTATTGACCCCCTTGAACGAATTCATTATTTTCTG 293680 37 100.0 35 ..................................... AAAAATTACGGCAGCAAGAATACCGCCATTGGGGA 293608 37 100.0 32 ..................................... AAATAGACATAGCGCCCTCAAGACGTGCGGAA 293539 37 100.0 33 ..................................... GATATTCCGGCTGATATCAAGCATCAAGCCGAT 293469 37 100.0 40 ..................................... TTGTATTTGCCACCACTGATTGGATTGGCATCTTTCAGAA 293392 37 100.0 36 ..................................... TACCATCGCTGGAAAGCAGTGCTAAAATTAGATTGG 293319 37 100.0 34 ..................................... TGCTTTACTGCTTGAGTAAAACTTGAAGGTTGTA 293248 37 100.0 41 ..................................... CGGCTGGCGTATTCTATTCCTCTGGCGCGAACGGCTCCGGT 293170 37 100.0 35 ..................................... CCTGACCTTCCCCAAAACTGGAACCCACAAGACTA 293098 37 100.0 35 ..................................... GCCCTCGTATTCCCATCCGCATTGATCGCAGCAGT 293026 37 100.0 39 ..................................... GGCTAAATTTCGATTCTACCGCTCCGAAGGAATCATAGA 292950 37 100.0 32 ..................................... CAGTGAATCACAAATCTGGACTAGGCGATCTC 292881 37 100.0 34 ..................................... CTTATTTTAGAACCAATCTTAAATACCCAAGATT 292810 37 100.0 34 ..................................... TTATAGGTGCCATAAGTAGCGATATATACTCCAG 292739 37 100.0 35 ..................................... TCCGTGAGAGAGATTAAAATTAGCAACCCCTTATC 292667 37 100.0 34 ..................................... CTGGTAAATGTTTGCAATATACTTATTACGTTCT 292596 37 100.0 35 ..................................... TTCTAAATCTTCAAGAGACCAATCTATTAAAGTAA 292524 37 100.0 38 ..................................... GGCTCGACGAACATTAACGGACGCGATCGCAGATTATA 292449 37 100.0 34 ..................................... GCAAAGATAAAAGCTGTTTGCAAGGTAACAAAAG 292378 37 100.0 37 ..................................... CAGATTATGAGCAGCACTAGGAAGTGCGCCGGATAGA 292304 37 100.0 37 ..................................... TACGCTCCCCGCCGTCACCCTCCACCCGTGGTGCGTG 292230 37 100.0 35 ..................................... ACCGCTCCCCGGATTTTCCTTTCGGTATCTAGCTA 292158 37 100.0 30 ..................................... AAAGTAGGCGATCGCCCGGTTTATTTGAGA 292091 37 100.0 34 ..................................... CTGGCTCTTTTGCCTTTGAGGTTGCTTCCTTAGC 292020 37 100.0 39 ..................................... CAATTTTACACTACGCCACAAGAACAAGACAGCAATAAT 291944 37 100.0 36 ..................................... CATCGGCTCATAGATTCGGAAACAATCCGCAATACT 291871 37 100.0 37 ..................................... TCGCTTTGCAATTGGGAGACACATGAGATGGAATTGA 291797 37 100.0 38 ..................................... ATCGGCTTTGCAATCAAAATCTTTATGGAGTTATAAAA 291722 37 100.0 34 ..................................... ACCTCCGATAAAGACGGGAATGTTTCCGGTTACT 291651 37 100.0 41 ..................................... TGTATCAAGACTAACCACATTCTCTATTTGTCGTGCAACGT 291573 37 100.0 35 ..................................... TCAAATTCTACGGGGTAAGTTTCCTCAGTTTCATC 291501 37 100.0 35 ..................................... GAATTTCTCCAGCACGATCTAGAACTGGCACAACT 291429 37 100.0 35 ..................................... ACCTGCCCACAGGAATCAGCCGTTCTGGTAACAGC 291357 37 100.0 38 ..................................... CTCACATACCTAGCTCTAATAGTTTGACCTCCATACTG 291282 37 100.0 43 ..................................... TGAATTGATCGATCACCTAGAAGTCGGCAAGGGAGTCGTCATC 291202 37 100.0 34 ..................................... ACCGCGCTGCCTTGATTCGTTCGGTTTGGCGCTC 291131 37 100.0 33 ..................................... TTATCTTCGTTCTTAATAGGAGAAAAATCGATG 291061 37 100.0 35 ..................................... AAGAGGCAGCAAAAAGCCCCGACCGGAGCCGAGGC 290989 37 100.0 35 ..................................... AACAAAGACCTGAAGAACCCAAGAGCATCGTTTTT 290917 37 100.0 35 ..................................... TTACCGCCGGTTATGTGAGCTTCTGGGAAACTCGA 290845 37 100.0 33 ..................................... TGATATCTCCATCCTCAATGCTGCATTTGAGGA 290775 37 100.0 36 ..................................... AGACTCAACCGACTTGTTATAAAACAACACCTCCTT 290702 37 100.0 36 ..................................... TAACGCCCGAATCAGCTCACAGAGAAAGTAAACAGC 290629 37 100.0 33 ..................................... TGCGGTCTCATCGGCTTTATCAAAATATATAAA 290559 37 100.0 34 ..................................... GTTTGCCTCAACTTTCCGGGGCAATTGTCCAGCG 290488 37 100.0 33 ..................................... GAGAGGGATAAAAGCCGAGAGGCTAAGTTCAAG 290418 37 100.0 32 ..................................... GTTGGGGCGATCGCATTAAATCTCCGCCAACC 290349 37 100.0 35 ..................................... CAGTACAGCCAGCGACCGCGATATCCGCGTTCGCC 290277 37 100.0 43 ..................................... AAATATTAGTGAACCACTACCTTTTAGCTTAATAGCTGCACTT 290197 37 100.0 34 ..................................... TATGCATTCGGATGCTATACTGATGATACTGCTG 290126 37 97.3 41 ...................T................. TTGAAACAAAGTAAATTGCAATCCCAAGTCTCTGCTGAAGC 290048 37 100.0 35 ..................................... TTGAAACCGCAATTGAAGGAATCCAACTCTATGTC 289976 37 100.0 32 ..................................... ATGGGATACCACTGGCTAGGCCACATTATCGA 289907 37 100.0 38 ..................................... GCGGCGCTGGGGGCTGGGGTTCTGGCAGCGGAGGCGGC 289832 37 100.0 39 ..................................... ACAAGAATTTACAACTCTAATAGGAGTCAATGATTTCAA 289756 37 100.0 35 ..................................... CGGACAATCGCTCATACCAAAAAATCGTGCAACGC 289684 37 100.0 34 ..................................... GGCCGGAAGAATGCCTTCGACAACAAGGGCTGTG 289613 37 100.0 33 ..................................... TTCTCCTTTTATCTTCGGCGGGTGCGATCGCAC 289543 37 100.0 34 ..................................... ACGCTTGGGCGATCGCTTTATAAAAACTACCGAA 289472 37 100.0 38 ..................................... GAGGCGATCGCAACCGTTGCCATTGAAGAGGGCGAATT 289397 37 100.0 34 ..................................... ACATCGCCGGGAAATTTAGGTCAGGCAGAGAAAT 289326 37 100.0 35 ..................................... ATTTTGAAGAGTTCGTTCATGTTTATTAAATATTG 289254 37 100.0 33 ..................................... ATGCAGCAGCGAGAACTCAGACAGCTTGACCTC 289184 37 100.0 32 ..................................... CCTAGGATTCCAGCCTGCCACTGGATTTATGA 289115 37 100.0 41 ..................................... TCGCTAGATTCCCTCGCGATTCCAACAACTGACGGGACAGG 289037 37 100.0 37 ..................................... ACTGTGCAATCCCATAAAGGTAAATCCTTTTATGCCG 288963 37 100.0 35 ..................................... GTATTTTGCCGACTACTTTGATGATCTGTTACAGA 288891 37 100.0 36 ..................................... TGGCTTAGATCGCTTGACGGCTTGTTGGATGCTCTG 288818 37 97.3 35 ....................................A GGGGTAGTTCATAGCAGTTTGTTCTGGGAGCTAAT 288746 37 91.9 0 .............T.........A............G | ========== ====== ====== ====== ===================================== =========================================== ================== 95 37 99.9 36 ATTGCAATCAAAACTAATCCCTATTAGGGATTGAAAC # Left flank : ATGTTTGGGCAAGTATGGGCCAGGAGTCGGAAGCTGATAACCGCATTCCCCTATTTCAACCCTATCAACTCAATACGGAGTTATTAGGCCATGCGGACAAAGATGCGATCGTTCTCCATTGTCTCCCAGCCCATCGCGGCGAGGAAATTACCCATGAGGTGATGGAGGGTTCGCACTCGCGCATTTGGGATCAAGCAGAAAACCGGATGCACGCTCAAAAGGCTTTGCTGGCAAGTTTGCTAGGCTGCGACTAGGCGCGTTTCTTCTGGGCGTTGCGCGAGGGGTTGGGTGTGGATTTTCTAAGGTTGCTAAATATCGCTGGAAGGCTGATGGCTGACAGGTTTGGGGGCATTTGCAAATCATGAAGGCTCGCGCACCTTATCTATCAAGCTTTTCAGCGATTTGCTCTTGTGTTCCCTTGGGTTCTATGCTACCTTTAGGTCAGCCTCGCGCAAGCGTACCTGGAAAACTAAATATACCAAGGGTTCTGGTCGCCCGCG # Right flank : CTGTAATTGAGCGAAAATAGATAAATCGAATTGCCGAGAGAAGAGAACGAGGACAAATCGAAACCATGTACAAATTTTACTTACCAAACCTGGGCGTCACAGTTTCGCTAGAGGTTGAAGACCCCAATGCTAGTGCGGAGATGAAATTTGAGGGAGAGAAACCGCAAGTTCGGCTAACCCGCGCCGAACTACATGGAGCGTATGGAGCCTTTGGTCATACCATTGATACATGGGCAACCCCCATTGACCTTCATTGTGCATTAGTGACCGCAGCCCAGAGCGATCGCAGATTTGAATTTGAGATGACTGAAGGCCAAATTGATAGCTACGATCCGGGCATCCCACCCGATGCAATCACCTAACAGCAATATAGCGTTACCTTCCACCCTCGCCATCCCTAATTTTAGGAATTGGGTTGCAGGCGATCGCACTTCCACTGCCCATACCCCTTGTAATAAAACTGTAAAGATTCCATAAACCAGGCATAAAACTTAATTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 11007-7009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRA010000005.1 Desertifilum sp. FACHB-866 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 11006 37 100.0 36 ..................................... CTTCTCCGGACTGGTAGCCACCAACCAAAGCAATGA 10933 37 100.0 36 ..................................... TGAACGTCGGTTTTACCTTGCTGCTCGGAGTAGGTG 10860 37 100.0 35 ..................................... TGGAGAAAACTTCAGACCTTAAATCATACCTGGGG 10788 37 100.0 37 ..................................... TCTTCATCGTTCCAAAGCGTAATTCTAGAACCCCATC 10714 37 86.5 34 .GG.G.T..T........................... TCTTCATCGTTTCACGCAAAACGGCCCCGCTTTG 10643 37 100.0 41 ..................................... CAGGGAGAAGAGGCTACCCCAGACATCAGGGTACAACTGTG 10565 37 100.0 35 ..................................... TTCCCCACTTTTGCTTGTATATTTTTAATCAGCGC 10493 37 100.0 35 ..................................... CCTTGTCGCTGGCAGGATACCCCTAGAGGGCATAC 10421 37 100.0 50 ..................................... CTGGAGTGTATTCGATTTTTGAAAGAGACGAGCAAGTTGTAGCATTGCAA 10334 37 100.0 34 ..................................... AAAGCCGCCGGGGGGGGAGATCCGGAGATGAAAA 10263 37 100.0 35 ..................................... CGATCTATCTTGATGGCTTCTAGTTGATTTTTAAG 10191 37 100.0 34 ..................................... TTTTAGCCTGATTGCGGCTTGGGCCTCTTTCAAC 10120 37 100.0 35 ..................................... GGCTTGCTTAAATATCCGATTGTCCTTAGCTTTGT 10048 37 100.0 38 ..................................... TTCGATTTAAGCTGCGGTTAAAAGCTCCCATTCATCGG 9973 37 100.0 36 ..................................... TTGCCGCTAAGAGCTTGCCATGCAGTGGTAGCCTTC 9900 37 100.0 34 ..................................... CCGACATAGCGCATGGATTCGCCCAAGCTGCCGA 9829 37 100.0 35 ..................................... GCCGCCGCGACTGTGGTATTGCCTTGCTTCATCCG 9757 37 100.0 35 ..................................... CGGAAACTCTGAGAACCTGAATCCCGGAATCTTAG 9685 37 100.0 41 ..................................... GAATCCCCTAGCACACCCGCTACAGCTAGCGGCAGACCGTT 9607 37 100.0 36 ..................................... CACTTCTGGCTCTGGCTCAGATTTCTTCCGGGGCAT 9534 37 100.0 33 ..................................... TCATTCCACCACTGCCAACATCACCTGGTAAGG 9464 37 100.0 35 ..................................... TTAACCACTTATTCATAAACTCACCACCTAAAAAG 9392 37 100.0 33 ..................................... TTTAACCCCGGCCGCAATCGCGAGACGTTAAGC 9322 37 100.0 38 ..................................... CTTAAGCTGGATATTTTTAAGCGGATACGCAACTGGGA 9247 37 100.0 40 ..................................... TTTACAACGCCCTGTAAGCTGGCTTTAACCTGATCTGAGG 9170 37 100.0 34 ..................................... AGAAATTCCGAGGGAGGCATTAAAGATAATGCCC 9099 37 100.0 37 ..................................... AATGCCTAGCGCCTCCGAAAAGAAAGCGTCAACAAGT 9025 37 100.0 37 ..................................... GAAATCTCGATCAAGGCGACAGATACCAAGGCAAGTG 8951 37 100.0 34 ..................................... TCCTGCTTATGTCTGTATCCGTTATCTAGAGCGC 8880 37 100.0 36 ..................................... ACGATTTGCCTTTATTTCTGGCTTCAATATCTAGAG 8807 37 100.0 44 ..................................... TTGACGCATGGGACTAAAAGCTAGCCAACAATTCCCCTCAAAAG 8726 37 100.0 35 ..................................... GAGAAACGGGCGCGAACTTTCGCTAATTTGATAAA 8654 37 100.0 33 ..................................... GTTGTAAGTCGCCACGCCAAGGACGCGCCTCAA 8584 37 100.0 34 ..................................... GCGGTTTTGGGCTACAACGGTATTTAAAATAAAA 8513 37 100.0 34 ..................................... GATTGGTTACAGGGGACTTTTCCCAACCAAAATA 8442 37 100.0 35 ..................................... TTAGATTAAGTGAAGCTGGAGGGGAAATATTTTTA 8370 37 100.0 43 ..................................... AAAAACTGAGAGGGAGGCATCAAAGATAATGCCCCCGTGTCAG 8290 37 100.0 36 ..................................... CGCTTCAATCCGCGTGCCATCATCCATATTAAGGAG 8217 37 100.0 36 ..................................... AGCGATAATCCGGGCATGATTTCTAGAAATGCGATT 8144 37 100.0 36 ..................................... TCCATGTCAAAGCTTCGATCGCGCTGTCGCTGGGTT 8071 37 100.0 38 ..................................... CTTCTGTAGAATCGTTTTGCGCTATTGGCAACTCTATC 7996 37 100.0 34 ..................................... ACTCTAATTGCTTAAAAGCCTACTAGGAATCTAA 7925 37 100.0 39 ..................................... AAATTAAACGAAGGCAGCGATCCAAGCAATCCTAGGGTT 7849 37 100.0 34 ..................................... TACAGCAGTGCTTACCTTTCAAGAATTGCTGCTG 7778 37 100.0 35 ..................................... CCGTCACTCCATTCAAACCGAGCGGCGTACGCCAC 7706 37 100.0 33 ..................................... TAAAGCCTTTGATCGTACAGAAGCAGTGGCAGA 7636 37 100.0 34 ..................................... TGGGATGACAAGCTTTGGAACAAGAAAAAAGAAG 7565 37 100.0 39 ..................................... GGTTTCGCTGAGGGCTTCAGCTTCGACAAATTCGCAAGG 7489 37 100.0 42 ..................................... GAGGCGCTCCGAAATTTCATCCACCTCGAAGCCGGTGCCAGA 7410 37 100.0 34 ..................................... AACTGTTTGTAAACTTCAGCAGCATTGTCCTCTT 7339 37 100.0 37 ..................................... AGGATGATTGAGGTTGTTACGAAGGTGGGTAGCTAAT 7265 37 100.0 37 ..................................... TCGCAAACTCACCCAAAAAACGTTAAGGTGAATCCCC 7191 37 100.0 36 ..................................... AAGCGCGGTAATGCTGACGGTTGTACAGCCACTGCG 7118 37 100.0 36 ..................................... TAAACCTTTTTACTGGTAATCCCTACGGCTATCCAT 7045 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 55 37 99.8 36 ATTGCAATTACTCCTAATCCCTATTAGGGATTGAAAC # Left flank : CGTCAAAAATCCGCTTGTGGATACCCCCCGGTTCTAACCCCGCGACTTGGGTTGCACCCACATCAAAGGTAAAGCCTTTGCGCTTGAAGGTGGAAGCGCACCCACCGGGGACAATTGCTAAATCGAACGCGGTGACGGGATAATTTTGATGGGCTAAAAGGGCGGCGGCGGTTAGGCCTCCAATACCAGCACCAATGACGACGACTCGCGGTTTAGTCGAACTCATGCGTTAATAATTTACAATTCTTAATAACTTTATTCTAGCGGTACGCTCTGCGCGAGGGGGTGGGTGTGGATTTTTCCCTCTCTAAGAAAATCGCTAGAACTCTTGTCTAGTCTAAGTTACAAGAAACACCCTCTCAAAACACGTCGCGCACCTTGCCCAGTAAGGTTTCTGGCGTTTCTGTCTATCTTTTTGCAGTCCCCTATGGTACATTGGAGTCAGTCTCGCGCAAGCGTACCTCGAAAACTACATAAGTCAAGGGTTCCAGAAGACCGCG # Right flank : GAGATAGGGCGATCGCGCTCTCTAAATTAAACTGAGATCCTCCCGAATAAACTCCAAGTGTGATGGTTTTATATGTGGCTGTGTTTCTCCTGAAAAGCAGCAGTGGTGAAAAATACTGAAAAGTAACAATACCTGTTGTGCCATTGGGAGCCATTGAAAATGCAGAAACCCGAACCATCTACCAACTTGCACTACCTCATCCCCTTGAGCCTTGGTTTACTCCTGCTCGTCGGTTGCAGTAGCGCCCAAACCGCAGTCAGCCCCAACCCTGAACCCTCCGTTGCACCTAGCCCAGAACAACCCGCCACCCCGCCAAGTTCAAACGAAACCAGCCAACCCCCAGGTGTTGCTCAAAATCGCCCCACCTTTCAAGCCGATAGCGACAACCCCAACTACCTGCGCGACTACGAACCCACCGAACCCCTCCCCGCCACAGGTAGAGTCACCATACGCGGCGATGCGCGACCTTTAGACCCTTCTAACTTATTTACTACCTGTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACTCCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 88810-83584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRA010000006.1 Desertifilum sp. FACHB-866 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 88809 37 100.0 36 ..................................... GACAACAACACCGGAACGAGGGGCAAAACCCACAAA 88736 37 100.0 34 ..................................... TGTATACAAGGGGAGTTTTGCAGCGTTAGCGTGT 88665 37 100.0 34 ..................................... AACTAGCACCCCAACTTCATCGATAAAGTAGAGA 88594 37 100.0 38 ..................................... CCTATTTCAGGAGGGGACAGCCTGCATATACAACGCAG 88519 37 100.0 35 ..................................... TGTAGATGTTGGCGCTCATGCAATCATTAGTTCCG 88447 37 100.0 33 ..................................... TCCTTGAATCGATGCGACTACTCACCCTATGAA 88377 37 100.0 36 ..................................... CGCGGTAGCTGCGCTCCAAGGCGGCAGCTTGTTCGG 88304 37 100.0 35 ..................................... AGGAAGACTTGGAAGTTCTTGGGGAAAAAACTAAA 88232 37 100.0 36 ..................................... ACCGCTCAATTGCCTGAATTGCTTGGCAACCTGATT 88159 37 100.0 35 ..................................... CGCGACTTGGCAGAACAAGAACGAGCGATCGCATC 88087 37 100.0 35 ..................................... CAAAGGGACATAGATCTCGCTAGACCACTCCGAGG 88015 37 100.0 34 ..................................... ATCATATCGGTATTTAAGAAATCAAAATCTTGAT 87944 37 100.0 33 ..................................... TCTCCAACGAGCGATCAGCAACCTTTAGCACTT 87874 37 100.0 35 ..................................... ATCTAGCGCTTCTTTAATTTCGCATTTGCAATTGT 87802 37 100.0 33 ..................................... GCGAGTAACCTGATTGCAAGCAAATTCTAAATC 87732 37 100.0 36 ..................................... ACCGCTCAATTGCCTGAATTGCTTGGCAACCTGATT 87659 37 100.0 35 ..................................... CGCGACTTGGCAGAACAAGAACGAGCGATCGCATC 87587 37 100.0 35 ..................................... CAAAGGGACATAGATCTCGCTAGACCACTCCGAGG 87515 37 100.0 34 ..................................... ATCATATCGGTATTTAAGAAATCAAAATCTTGAT 87444 37 100.0 33 ..................................... TCTCCAACGAGCGATCAGCAACCTTTAGCACTT 87374 37 100.0 35 ..................................... ATCTAGCGCTTCTTTAATTTCGCATTTGCAATTGT 87302 37 100.0 33 ..................................... GCGAGTAACCTGATTGCAAGCAAATTCTAAATC 87232 37 100.0 39 ..................................... TGATGTAGAACTCCCACTTAACCACCTTTGGCTCAACAT 87156 37 100.0 43 ..................................... GCATCTTTTTCCTGGAAAGGCGTTTGACCCGCAATGCCTGCAA 87076 37 100.0 37 ..................................... GGAAAATGTTAGAAATTGGATTTCCGGAATAATAGCT 87002 37 100.0 52 ..................................... GATGTAATGGCACGCCTAAAAGTCAATATGCAGGCGATTGAACGCCTCACCA 86913 37 100.0 35 ..................................... CACTAGGGTGGTTTTTCCGCTCCGAGTTTTGGCAA 86841 37 100.0 35 ..................................... CAGACTTGGGAAACCGAAACCGCCCGCGCATTAAA 86769 37 100.0 39 ..................................... TCGTTCAAAATGGAAGATTTAGTCGATCGCGAGTTGTAT 86693 37 100.0 44 ..................................... GTCCGCATTGCAGAGCGCTCCTATGTGGAAGCAGAGATCGGCAA 86612 37 100.0 35 ..................................... GGGAATGCCCTAATTGCAAAACCAAGCACGATAGA 86540 37 100.0 37 ..................................... CATCGCCAACGGCGAAACCTTCATCTTAAAGCTAGAG 86466 37 100.0 34 ..................................... CAGCCCTAAAAATTTAGCAATCACATCGGGACTC 86395 37 100.0 35 ..................................... AAGGCAATATCATCTTCGTTGCGGGTGGGTCGAAG 86323 37 100.0 36 ..................................... TTAGAAAAGGTTGTTTTGCATGTTGCACCAACCTTG 86250 37 100.0 35 ..................................... TTGAAAGCGTTGTCAATTTCGTGGCAAGAGTATAT 86178 37 100.0 41 ..................................... ATGCGATGCTCTGCCTTTGACCCACCGTGCAATATCGGCAG 86100 37 100.0 37 ..................................... GCGACGTGAAACTAGCATTTTCTTCGTACTGCTTGAA 86026 37 100.0 44 ..................................... ATGAAGTTGGCGTAGAGAATCGGTTCAAAGGGAAACGGGATAGC 85945 37 100.0 34 ..................................... AAAATGTCGGCGGGGATGTCGGCATACTTCAAAC 85874 37 100.0 40 ..................................... TGTTTCTGATCGGTGCAGCGATCGTAATTGGCTCATCGCG 85797 37 100.0 38 ..................................... AGGATATCGCTAGGAATTTCCTGGTAACGAAGCGCATT 85722 37 100.0 35 ..................................... GGGATAAAGCTTCTCTTTTATCTTCTAGGTTTCTT 85650 37 100.0 37 ..................................... GCGATCGCCGCGACCTGGTTGAGGATTATTTTTGCGG 85576 37 100.0 45 ..................................... GAGCGCTTGACTGCTGATTCAGCCAATTTTCTACTGCGAACTGGC 85494 37 100.0 35 ..................................... GAGCGCTTGAGGATTGTATCTTGTTTGATTTTGAG 85422 37 100.0 35 ..................................... CATTGATTCCCAAGAGATGAATCTCTCAATACTTT 85350 37 100.0 35 ..................................... CGAGAATAGCGATCGCCGTATCGCCTACGACCTCG 85278 37 100.0 34 ..................................... AGCCATCGCTAGCAGTGTGGAGCGCATATCATCC 85207 37 100.0 34 ..................................... CTGCTGCTTGACGGCATTCCAAGCGGCCAACAAG 85136 37 100.0 35 ..................................... AGAAGGAATCATCACCGTTCCGCTGCTATTGGCGG 85064 37 100.0 33 ..................................... CTGGTAGATCGAATCGTTATGCAACGCGATCAG 84994 37 100.0 34 ..................................... TCCTCGTCAAGGGCGCGATCGCTGCTGAACACCA 84923 37 100.0 34 ..................................... CTATTGATAGCTTTGCTTTAGAGGTTCCCTCTGA 84852 37 100.0 34 ..................................... GCCGAAAACGTAGACAAGAAAACCCTATATTCGG 84781 37 100.0 34 ..................................... ACTAGATTCCAAGGTAGGTGTAGACTCAACTTTT 84710 37 100.0 38 ..................................... TCCTACTGGTGAACTTAGGGCTAACTCACCCAACACCA 84635 37 100.0 36 ..................................... TCATCCGAGATTCTACTTATCTTTATATTGAGCAAG 84562 37 100.0 34 ..................................... GGTGACGGCGCTCATTAAGTTGCCGAGCTTGATT 84491 37 100.0 37 ..................................... TCAAGAATTTCTCATAATATTATTAAGCCCGATATTA 84417 37 100.0 35 ..................................... TCCGCAGTTCGGGCAATTCATAATCTTTCCTCATT 84345 37 100.0 37 ..................................... TAAAATTTGCCGATTTTTTTCACTAGATAGCCAGTTA 84271 37 100.0 35 ..................................... TTTATTTGTGAGTCTATCGTATCACATCGTCAAAC 84199 37 100.0 34 ..................................... GCGATCGCTCTTTTGTTGGCGCTCGACTTTAGCG 84128 37 100.0 34 ..................................... AAGGCTTCAGTGGATTTGCTATACTTCTGCTTTT 84057 37 100.0 37 ..................................... CAGAGCAGAAAAGCGCCAATGAATCCGAGCTTGGTTC 83983 37 100.0 37 ..................................... CCTATCTAATCCGCTTTTGAATCTTAAGAAATTGCAA 83909 37 100.0 37 ..................................... TAATCAGAGATGGGCGAATGGCTCATTTGAGATTTGG 83835 37 100.0 36 ..................................... TTGTTCTACCCCTTTTTTGGAAAGATGAACAATTGC 83762 37 100.0 33 ..................................... AATACTATTATTGATATTATTATCTTATTATTC 83692 37 100.0 35 ..................................... AGCTCGGCGGGTTGATGTTTCCTTCCGATCTATTG 83620 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ==================================================== ================== 72 37 100.0 36 ATTGCAATCAAATCTAATCCCTTTCAGGGATTGAAAC # Left flank : GGCGATCGCACAATTCACCGTTCGCCGCCAAGCGGATGCTGAGGCGCTGTTGGAGTTATCTAATTATGCGTTTCCTCACCAGAAGCGCTTGCTGATTGAGTTTTTTGCGCGACAAGCGATCGCCAAGTGGCTTCACCCATTCTGGGGAGGGGGTTTCCCGCCGCCGATGTTTCAGTTGCTTTCAGATCCGATGACTCCCTATTCTGAGATTCTGGAACGCTATCGGGGTTGGATCGATCGGGTGAAGCGGGTACAGGTTTCTGGGGGATAGGTGGCGCGAGGGGGTGGGTGTGGTTTTGCTGGCAATAGCGCGATCGCTTGTAGCTCTTGCTGGGCTTGGTCGGGAGTGCGATCGCGGCTCTCAGGGGGTCGCGCTCTATACGGGGTAAGGTTTTCAACGATTTTGGCTTTTGATTTCTGGAAAACTATGGTACATTTAGAGCAGCCTCGCGCAAACGCACCTGGAAAACTAAATAACTCAAGGGTTCTAGCCTCCCGCG # Right flank : CAGTAGGAAAAACGGAGCGAAATCGAACAGAGAACAGACTCAAGAGAGGATCGGAGAAACAACCGTTGGGGAGGGAGGGAGTTTTTTGAGGGCTTGTAGGGCATCCGCCGCCGTTTGAAAGCGATCGCTAAAATGATAGGCTACCATTCGGTCAATCACCTCAGCCAACTCCGGGCCAACCGCAGCCAAATTGCGCCAAACCACGCCCCCCGTCTCTTGATCCTGGCGTAACTGGTGGGGGGCAATACCCGTCAGCGCCTGAATGCCAATCATCCCCAGCGCATAGAGATCGCTACTTAACCGGGGTTGTCCCACCAACTGTTCGGGCGGCGCATATCCCTTGGTCCCAATTGCCACGGTAATATTCTCAGTTTCCGGTTCCCACTGGGGTTGAATTTGCTTAACTGCACCAAAATCAATTAAACACAACCGTTGGTCAGACTCGCGGCGAATAATATTACTGGGCTTAATATCGCGATGAATCACCCGATGTTCGTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAAATCTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //