Array 1 49468-49833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWU010000013.1 Listeria booriae strain FSL L7-0509 NODE_13_length_71818_cov_65.407591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 49468 36 100.0 30 .................................... TGAAAGCGAATGAATTTGCTTCTACTGCAT 49534 36 100.0 30 .................................... CCGAGGTCAAGCGGCTATGGGTGCAGGTAA 49600 36 100.0 30 .................................... TGAAATTCGATGCTAAAGGAAATAGATCGT 49666 36 97.2 30 ...........................G........ GTGTCTACAGTAAAAAATACGGCGCAAATG 49732 36 100.0 30 .................................... TTGTTTGTGCTTGGGCTTACCCTTTGTCTT 49798 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGTAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAGCGTATAACCACATCATTTTTGAGAAACGGTTCTAGCGAGTCCTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGGTAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGTTACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAGCCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : CTTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGAACGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAAAAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCCGCCTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 65411-66558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWU010000011.1 Listeria booriae strain FSL L7-0509 NODE_11_length_114713_cov_56.205084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 65411 30 100.0 35 .............................. AAAATACCTGTGATAATACTCGGCAACCCTTTTTC 65476 30 100.0 34 .............................. CCTTTTTGGGCTGTTTTCGCTCCATCTCCTCTTC 65540 30 100.0 39 .............................. GTCTTAGCATTGCCATCCGCAAAGTCGTCCCTGCTTGGC 65609 30 100.0 36 .............................. ATTTATCACGCATCAAACCTGAATCACGGAAAATAG 65675 30 100.0 34 .............................. CAATCCTAATCGCATCCTCAACGCTACGAGCTAC 65739 30 100.0 35 .............................. GAAGATAGCGCGCTTTTTTTGAATCAAGAAATGTC 65804 30 100.0 36 .............................. ATGGAACTTGGAATATATTAAACATCGGCGTAATGG 65870 30 100.0 37 .............................. AAGAGCGGGTTGATAATCTGATGAGCCATTTCGACAT 65937 30 100.0 36 .............................. AACATGGTCGTATACACAGCATTGAATCGCTTCAAC 66003 30 100.0 36 .............................. ACACGAACGTTTAAATCTGTTTTGACAGAAGTATCA 66069 30 100.0 36 .............................. CTATATGCTAGTGGAGTTCCTCCAAGACTGTTATCT 66135 30 100.0 36 .............................. ACATTTTTTTGGTGGCGATGATTAGTTCACCCTTAA 66201 30 100.0 34 .............................. TCCAATAAAAATGCAGGAAGTAATCCGCCCCAGT 66265 30 100.0 37 .............................. CCTTTTTCAATATTGTTTTCAAGAGTGTCGTACGTTA 66332 30 96.7 37 .............T................ GATTGCAAGCATTTTTCGAAAGCAAAGGGCGCAGTTC 66399 30 96.7 34 .............T................ AACTTCGAAAAGTGGGCCAATACAATTCGATTAA 66463 30 96.7 36 .............T................ TTGGTTGGCACAAAATCAAGTGCTTGTCCGAAAAGG 66529 30 76.7 0 .............T...A..C..CA...TC | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 98.2 36 GTTTTTATCTAAGCAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTCGTTGTAACAGCAATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCCAAATAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 252563-250835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWU010000003.1 Listeria booriae strain FSL L7-0509 NODE_3_length_313930_cov_60.701978, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 252562 30 100.0 36 .............................. TTTATCAGCACATGTTAGTAAATAATTAGAAATATT 252496 30 100.0 35 .............................. CAAAGAGATGTCTATAAAGATATGCTTTTATTTTT 252431 30 100.0 37 .............................. AACGCCGTAACTACGCTTTCCCCGCAATGCAGTTTCG 252364 30 100.0 36 .............................. TTGTCAAATTGGGCTCGTAGAATACTTGTAATGCCC 252298 30 100.0 36 .............................. CAAGACAGAACGTACTCTATGCGAAATTTATGATCA 252232 30 100.0 36 .............................. AGCATGACGCCGATGAGCTACGCCGCTTGCGCGCGC 252166 30 100.0 36 .............................. AGAGTTTCGAAAGACCAAGGGGCACAAGGCCGTTCT 252100 30 100.0 36 .............................. ATACATGAAGCTGTTGAAAAGGGACTAGCAACGATT 252034 30 100.0 36 .............................. ATACCTGTAGGTGTGATGATTGTATTTTCAAATTTA 251968 30 100.0 36 .............................. ACGGCTTAGAAGGAGGGCGAGCTCAAAAGTATTTCA 251902 30 100.0 34 .............................. TCCTCCCCTATTAGTTTTACAGTTGGTTTCTTTT 251838 30 100.0 36 .............................. TTGTTTAATCCATCATCACCGTTCTGTAACGCTTCC 251772 30 100.0 36 .............................. ACATCTTCAAATGTACGTTCGACCAGATGGGGCTTT 251706 30 100.0 36 .............................. TCGTGCATGTCGTTTGCTTGTTTTATCGACCCATCA 251640 30 100.0 36 .............................. AAAATACCAGAAACTGCTTGCAATGCAAAGAAAGCC 251574 30 100.0 34 .............................. TCTACATCACCTCCGCAATTAGTAAAAGCATATC 251510 30 100.0 37 .............................. TAGACATCTTTATCGTTCCAAGATGGTTTACTATAAA 251443 30 100.0 34 .............................. GGATTTTAGCTAGGAAGGAAAAAGAAAAGCTAGA 251379 30 100.0 34 .............................. TCAGCAAGGCGCCGACCTTTAATTTTTCTAATTT 251315 30 100.0 34 .............................. ATTAACAACATGTCGTGGGTCAATACTAGGCTCG 251251 30 100.0 36 .............................. AGCTATGAGCAGAACTTTATCACATTGCTTGAGTTA 251185 30 100.0 36 .............................. GTGGATGATGAACGCTACACTGATGAAAATAGCATG 251119 30 100.0 36 .............................. TATCTATTTTCAGGATGAACATGCAGATCGTAGAAA 251053 30 96.7 36 .................A............ ATTGGCAGTGTGTCGGGTAATACAAGTGTGCCGTCT 250987 30 100.0 36 .............................. ATAGAAGATGCTAGACTATTTTTGATACGCTACTGG 250921 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [250865] 250864 30 73.3 0 .C....CC.A.....C.A.....CC..... | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 98.5 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTAATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGTCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTAATCGGGTACCT # Right flank : CAATCCATTTAGCTACGTCTGCTTTGGCAGACAATCTCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCCAGCGCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCGCGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATTTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 103093-102466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWU010000004.1 Listeria booriae strain FSL L7-0509 NODE_4_length_297413_cov_59.818777, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 103092 30 100.0 36 .............................. CTAAGTATTACAATTGCAAATAATAAAGGCGGGGTA 103026 30 100.0 36 .............................. CTAATCGGAAACAGGCGGAGTAAAACGCACTGGCTC 102960 30 100.0 37 .............................. AGAGCATCCACGATTAAAGCTAATTCATCGGCACCTA 102893 30 100.0 36 .............................. GTGCCTTTTTTCACGGTTTTAGTAACCGCATAATTG 102827 30 100.0 35 .............................. TCGAATGTGCCGCGGATTGAGAACGAAACAACTGG 102762 30 100.0 35 .............................. TCGAATGTGCCGCGGATTGAGAACGAAACAACTGG 102697 30 100.0 38 .............................. TCTACTAATTTTGATTTAACTGTACCAGATTGGATTGT 102629 30 100.0 36 .............................. ATCGTTCCCCATTCACGATTGCTTAACGTCGCAAAG 102563 30 100.0 39 .............................. AAGAATCGCAACTGGCTTACTTAAAAATTCCATAAATGC 102494 29 83.3 0 .................A....-.C..G.C | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 37 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGAAAGGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTAGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTGGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : TAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACAAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCTGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAACTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //