Array 1 744-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAV01000016.1 Clostridium tetani strain 358.99 contig_0016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 743 35 80.6 30 A.A...A..TG-.T...................... AGCACAGGAAATATATACAGCTGCTAAGAG 678 36 100.0 30 .................................... AATATAAAAACAAAAGAAGGGAAAATAAAA 612 36 100.0 30 .................................... ATATATCCAAATCCCTTAAATAAGATTCTT 546 36 100.0 30 .................................... TTAAATAATAATTATTATGAACCAGAAGAA 480 36 97.2 30 .........A.......................... ATACTATTTAAAAATTGACATTAAGAATTA 414 36 100.0 31 .................................... AGATAGGGGAGTTAATGTAGAAATTATTACT 347 36 100.0 30 .................................... TTTAGACATATGACCTTCACCACAAGCACA 281 36 100.0 30 .................................... TAAAAACCCTAATATTAATTTAGATCTATT 215 36 100.0 30 .................................... GGTTTTAAAACTGGCTTAATTACATTAACT 149 36 100.0 30 .................................... TTAAAACTATGTTAAAAGATTTAACCAAAT 83 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.0 30 GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Left flank : ATTCTTTCCTTATTTTTAAAGAAAGTATTATAAAGTTTAAATTCTTCCATAAGGAGTGGATCTTTAACCTTTAATTCTCTCATAATTACAGTTGCTCTGTCAGTAGAGAATTCCTCACTATAACAAAAAACATCGTAAAGCCAATCTTTTGAAGGTATTGGTTTTTTCATGTTAGAATACACAAGTATATTACTGGTTGTATCTCCTTTTTCTATATGATATTTACTCCAAAAGGCATTGTTATTTGTTAATTTAATAATTTTAATATTTTCTATATTAAGTTCATCTATATCTTTAGAAAAATCTTCATTACTATCATACCAAAATACTATATGACGTTTCTTTCCATTGGTTAATGGTTTTAAAAATAGTTCGTTTATAAAATTTCTTATTTCTTGTAAATTCATTTCTATTTCTCCTATCAAAATAAATAATTTGCATTCCTTCTAATTTATTTTAATTCCATGTAAATTATTATAACAAAAACAAACACTTTTTCT # Right flank : TTCAACTAAAGATATATCATTATCTAATAATGTTATATTTCCTATTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 14390-14745 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAV01000015.1 Clostridium tetani strain 358.99 contig_0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 14390 31 100.0 36 ............................... CTACGTAAAACCATGCTCTACATTGCTAATCCCTCC 14457 31 100.0 33 ............................... TTATAGTCTTTTCTAGTTCTGTTGTGAACTTTT 14521 31 100.0 32 ............................... CAAGTGGAACATTTAAATTTTTAACGGTTCCC 14584 31 100.0 34 ............................... GGGATTATTTAGAGATAATGTTTGATGGAGGAAT 14649 31 96.8 34 ..............................A GACGAAATATTAAAAGTTGCTTGTAATTGCGACG 14714 30 87.1 0 ........................CCC...- | AC [14738] Deletion [14744] ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.3 34 GTTGAACCTTAACATAGGATGTATTTAAATT # Left flank : GCAATTTTAATTTAATATCGAACCACCTTAAATTAATGCCCGAAAACCTTCGAGATAAACAACGGAAGTTTTCAGGCATTTACTACAAATATAATATTTTAGATGCAGAGGACAATTTAGTTTTAATGCTTGAAGGGAATTTTACAATAGTTTCTTGGATGACTACCTGCTCTATCTTTAAAGTTGGAGTAAAGAGCATTTACGTCTCCGGATAACGATTTCTAAGCTTTAGATGGAGTAAAAACTTTCTCTAAAGCTTAAAACTCTATTTATAAAAATAATCATATATTTATAATGTTATGTGATAAAATATAGACAAAAGTTTTCCCAGGTAATTTTAAATAAGAATGTAGCCTAAGGTATTGATTTAAAAGGGTTTATACCCTGTTTTTTAATGTGATTTTCCAAAAGTCAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTGTGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTCTTTCCAAATATCTTATTCTATCAGCGTCTTATCACCGGGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTAGTCCTATATTGTACTACAATGTAAATAATATTACTAAGCATAGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGCAATATTAATAATTTTATCCATTATAATTGCTATATCACCAAAGCTTGGGTTCATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTAAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAATCACAGGAATTGGAGGAGTTTTTTCTGAATTTGGAGAAAAAGATAATAAGTGGAAACAAGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 4562-4271 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAV01000021.1 Clostridium tetani strain 358.99 contig_0021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4561 30 100.0 37 .............................. ACTTACCTTCCAAAGTAAATACTGGTAGCTTAGGTCT 4494 30 100.0 36 .............................. CTTCTTTTTCTAAAATGCCTATTATTAGCAATTTTA 4428 30 100.0 34 .............................. TATTTTAAAGCTGCTGGTATAGTAATAGGGTTGA 4364 30 100.0 34 .............................. GCAAATTTTTCTAAGTTAATCATTTTAGCCATTA 4300 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATATAGTTGAGAAGAGAGATATTTTAGAGTTAAAAAAACTAAATGTAAATGAACATCCTTTACTTGAAAAGGAATTAAATTATAAATATGCAGATGAAAAAGACAATGTGCGATATTATATGATAAAGTATGATATTAAATTTAAAGAAAATATGGCTACACCTATAGATTCAGGAGTTTATTATGAAGTTATTACAGTAGTAAAACGTAAAAATAAATGGCTAGTAACCACTGGTATGCATAAAGCATCATTTCATAATGATAAGCTAACAATAGATAGTTAGAGAAAATTTATAGAAATCTGTTAAATAAAAGTTATAAACTTTTCCAGGTGATTTTAATTATAAATGTATCTTAAAGCATTGATATATAAGGGATTAAGTGGTGCTTTTAAAGGTATTTTAAAAAAAGCTAAATCACCTGGTAAATTTTTAGGAAAATGTTGAAATATCAATGGTTGTATGGTATTCTTAATTTTAAGAAACTTTGATTTTACAGTG # Right flank : CAACTAATGATAAATTAGTAGTGTTTAACACTGCTGATAGTGAAATTTCAGAAATTATAACGGCAGCTATCCATGACTCTAGTGGCATAGGTTCAGAAGATACGAGTTCTTTAAAATTTATGATTTTAGAAGGGGATTGGAATAATAAAGAAATTCCACAATGCTTTGAAGGAATTAAGTCCGCAGGTGAAAGTGGTAAAATACAAGTTTTAAGTAGAGGTAAAAATTTATTTACTAAAGATAGTATTTATTATTTAAACGTAGTTACAGGTAAGACTATAAGGAATCCAAGTAAATTTGTTAGTTCTTCTATTGCAGTTAAACCCAACACAAGTTGTATGTAGTAGTATTAACGCATTAGAAGGAAATGTTGTAGATATTGAAAAAGAATTAAATGCTAAAGCTAATCAAGAAGATTTTCATAAATTGGTTAAATTAGATAAACATGCAGATAGTATAATTAAGTTTATTTCTGAGCTTAATTGTACAGAATCCTTATC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 8608-8007 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAV01000034.1 Clostridium tetani strain 358.99 contig_0034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 8607 24 100.0 41 ........................ TTAAATGAAATTCAGCCGAGGAAGAAAGAAACGTAGTAGAA 8542 24 100.0 42 ........................ TTAAATATCCGAGAATAATAAAATTTTTAATTGTAGATATTT 8476 24 100.0 43 ........................ TTAAATTTAACCCACCATCTTCATTAATAGAAGGTGCATCTGA 8409 24 100.0 40 ........................ TTAAATTAGAACAACTAAAATCAAAAGGATATGAGGTATT 8345 24 100.0 41 ........................ TTAAATTATACATTATTATGTTTATAATTATTATTATTTTT 8280 24 100.0 41 ........................ TTAAATTATACATAAAATGGGGAAGTGTTTTGATTTTTAGA 8215 24 100.0 42 ........................ TTAAATCTGTTTAAGATATAAATATTGTCATCTTCTGTATAA 8149 24 100.0 43 ........................ TTAAATAGGATTATTGGCAATACTAGTTATAATAGGAGATATC 8082 23 87.5 29 ...A............T.-..... TTAAAAATAGTTTAAATTGTAATAGTATA T [8068] Deletion [8031] 8029 23 75.0 0 C..-....A......GA.....T. | ========== ====== ====== ====== ======================== =========================================== ================== 10 24 96.2 40 GTTGAACCTTAACATAGGATGTAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGGGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAAAAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGGGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTTTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAATGATGGATAAAAATGAAGAAAAAATTAAGATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGGTATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATTAAAGGTATTTTTACTTAAAGACATTAAAAGTGATGAAAGTTTAGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5069-4571 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAV01000038.1 Clostridium tetani strain 358.99 contig_0038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5068 36 80.6 30 ......T.........T.....AA....TGA..... TTAATATATTATATAATTACAAAAGTAGAA 5002 36 100.0 30 .................................... TTTCCAGTAACACCAGTTAAAGTGAATATA 4936 36 100.0 29 .................................... GTACTTATTACTGAAACATTACAGATTTA 4871 36 100.0 30 .................................... TTAGATGAAGCTTGTAAAATACTGAATATA 4805 36 97.2 31 ....A............................... TAAAACCTTCGATTGCTTCACTTGTAGATTT 4738 36 100.0 30 .................................... AATAAAAAAACTAATTCTAATTATAGATCT 4672 36 100.0 30 .................................... AGGGAAACTTGGACAAAGTTATATCAAGTG 4606 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.2 30 GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Left flank : TAAATATATAGTAATTAAATTTTTTATTA # Right flank : AGGAACTACCAAAGCCCTTGAATCTGCTAAGTTTCAAGGGCTTTGGTCTTTTTAAAAAACATTTAATTGACTGGAATTTATATTCTTTTCTTGTGGTTTTGGCGAACCTACTAAAAACTTCATTTCACAATATTGTTTTTCTGTAATTTGCAAATACCTAACAGATCCTTTAGGAGGTAGATTCTTCTTAAGCCTTGCAACATGCTTATTTGCACCATCTATTCCATTACAAATTCTAGAATATACAGAGTATTGAATCATTATATATCCATCATTTAATAAAAATCTTCTAAAATTCTGGTACTCTTTTCTATCTTCTCTTTTTACAACAGGCAAATCAAAAAATACAATTAGTCTCATAAATCTCCTACTCATAATAATGGTATTCCAATGGTTTTATTAGTGGTAATTTTAATAATCTAAAATCTTTTTTACTACAAGCCGTTGTATAAGAAGCTACCATTTTATCTATGGCATTTAAAATAGAATGATTTTGTTTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 553-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAV01000033.1 Clostridium tetani strain 358.99 contig_0033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 552 30 100.0 35 .............................. TCTTTTATACCCACCATACCCGTAGACATTTTTTA 487 30 100.0 35 .............................. CTAGGAAACAAGATAAAAAACTTCCCTTATGAAGG 422 30 100.0 34 .............................. TAGATGTTTTAAGAGGTTTTTTAATAAAAGAAGG 358 30 100.0 36 .............................. ATATTTATAACAACATAATAAATACTTATGTAACTC 292 30 100.0 34 .............................. ATATCCATAATTATTCCCTTTACCTCCAAAGCTT 228 30 100.0 35 .............................. ATTGATAAAAGATGCTAAAAGATTAAGATTAACTC 163 30 100.0 36 .............................. ATTTTCAAAACTCCATGGAAATATAACTTTAAATAA 97 30 100.0 34 .............................. GTATATGTAAAATTTATTCAAATTTTATAAATAA 33 30 80.0 0 .A.......A...A.........A..A..A | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 97.8 35 ATTTAAATACAACTCTTGTTATTGTTCAAC # Left flank : TTGTTCCATTCTTATCAAATATCATTCTTAAATGTATTTCGGTATATACAATACCTATAATTATAATAATCAACAAGCTCAATGACGATATTCCCATTGATAAATTTAAATTATTGCTATATAAATATCTTATTAATATTGAAAATGGTATAAAAATAATACCACTTATTAAAAGTATTGTCCCGTAGAAACGACTTCCCTCATACCATGTGTCTTTATTTTTCATAGAAAATGGTGTTCTATATCCAAGACTATTATTTATATGCTGCGGTGGATATGCCCTTAATACCAATCCAATTACAATAAAAGCAAGTCCAATAATACAACTTGTTAAAATACTCATGAAATATCACTCCTTCAAATTTATAACAACGCCATTACACCATATATTTCCTTAAATTGCTATTAAGAGCATTTATATGCTATCTACGTAATCCGCTAAAAAGAAAAATACTTAATTTAAATACATCCTATGTTGAGGATCTATTTAAAGGTAAATA # Right flank : AAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACAACTCTTGTTATTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 4715-5200 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAV01000033.1 Clostridium tetani strain 358.99 contig_0033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4715 30 100.0 34 .............................. TGTCTTTTAGTATCTTCCATTTGTCCAATAGTAT 4779 30 100.0 35 .............................. GAATATACTTTACTTCTAAAACTATCATCTTGATA 4844 30 100.0 33 .............................. TTTAATTCTAGTCTTCTTTTTTCATATCCAATA 4907 30 100.0 36 .............................. CTTAATCTAAGCACTGGCATGAGTGCTTCTTGCATT 4973 30 100.0 34 .............................. ATGGTTACCATCGTTCTTTATTCTTAAATTTAGT 5037 30 93.3 38 ...............AG............. TATCGTTGGAATGTAGAGGGTTTTATATCCTGGGATAC 5105 30 100.0 36 .............................. TTCTCTGTTCTGAATTTAATTTATAATACATAATTA 5171 29 90.0 0 ................-.A...T....... | T [5185] ========== ====== ====== ====== ============================== ====================================== ================== 8 30 97.9 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ACCTTAGGTAAGCCTATGTATGTAGTGGATATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGTCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCCTTGATTTAACAGGGATTGATTAATGTTTAAAGGGAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAATCATTTTGAGAATATACATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTCTCTTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCCCATATGCCATACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGAGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 7052-7739 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAV01000033.1 Clostridium tetani strain 358.99 contig_0033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7052 30 100.0 36 .............................. GTATTTCAAGGGCAAGCAATCTACAACATAATTAAA 7118 30 100.0 36 .............................. CTATATGTATAAATTAATATTAAGGAGGGTATAATA 7184 30 100.0 35 .............................. AAAGGTAAATATAAAAAATGTAGTAAATGTGGAGA 7249 30 100.0 36 .............................. TTAAGAGCAATAAATTTTTTAAATTCATCCACTGTC 7315 30 100.0 35 .............................. GGAACAATTATCTATAGCAGAAAAGGCAGTAGAGA 7380 30 100.0 34 .............................. AAGATATCAATATATATAATTACAAATACTCTCC 7444 30 100.0 36 .............................. GCCAGAGAATGGGGAATAAATTTAGGACAAGGATTA 7510 30 100.0 37 .............................. TCATTTACATGGCTATAAGTTTTGAGTGTCTGCTCAA 7577 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 7643 30 100.0 37 .............................. AAGATAATGAATACCAACCGGAAGAAGCAGCAAAAAC 7710 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.4 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTATTGGACTCTAAAAAAGACGATAAAATAACAATAATTAATAACTCTAAAATAGATGAGGGCAAATTCTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAAGGATGCTATCTTGTTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGCATAGATCTTAATTACAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATCTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //