Array 1 26508-26277 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJL02000026.1 Aggregatibacter actinomycetemcomitans serotype d str. I63B contig00029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26507 32 100.0 34 ................................ CGGAGTAATAGCAACTCAACGCGTCATTGACACT 26441 32 100.0 34 ................................ TCTCCCATTTACAAAACATTATTATATTTAATTT 26375 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 26308 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4210-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJL02000100.1 Aggregatibacter actinomycetemcomitans serotype d str. I63B contig00129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4209 28 100.0 32 ............................ TATTATTTGAAAATCGAAGATTTTCTGTTCCT 4149 28 100.0 33 ............................ CAACAGCAACCCCTACTCAAGCACCGGTTTAAC 4088 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAAACCGG 4028 28 100.0 32 ............................ ATCTAAACTACCTCCAAAATGTTCCTTACAAG 3968 28 100.0 32 ............................ ATGATGATAAAACTACACAAGCTCAAGGTTCA 3908 28 100.0 32 ............................ TATGGCTATTTTAAGAAATTTAGATATGTTTT 3848 28 100.0 32 ............................ AACAAACTGCACTGATAAGCAATTATTGGTTG 3788 28 100.0 32 ............................ TGCTCCACCATAAATCAAAGCTTTTATACCTT 3728 28 100.0 32 ............................ TACTCAAGCACCGGTTCAACAAGCAGTAGGTA 3668 28 100.0 32 ............................ TCCAAAGTACGGTATTGATGAAGAAATGCTTT 3608 28 100.0 32 ............................ TTTAATTGTGGCTATTGAAAATGGTTTACTAA 3548 28 100.0 32 ............................ AACCAAGACCAAAAACTTTCAGATTATGAAGT 3488 28 100.0 33 ............................ CTATAAAACAAGCATAGAAGCTTTTAAAATAAA 3427 28 100.0 32 ............................ TTTGCCACCTTCACTGATGATTTTCCCTGTCA 3367 28 100.0 32 ............................ TAATGAAAATAGAAGTCATTTAGGAGCAAGCC 3307 28 100.0 32 ............................ TAACGCACAAAATAGTTAATCAAATTTGGGTA 3247 28 100.0 33 ............................ CATTGGTTGTTGCGTTGCAATACTATTAATTAG 3186 28 100.0 32 ............................ ATGATGACAAAACTACACAAGCTCAAGGTTCA 3126 28 100.0 32 ............................ AATAAATTGTTTGGTTTGTATTTAATTTAAAC 3066 28 100.0 32 ............................ CTCTGAACAGTTGTCAATTCTAAAATTATATG 3006 28 100.0 32 ............................ AATAATCCTCTCGGAAAGCAGTGTGTGCGGTA 2946 28 100.0 32 ............................ ATCTCAATTAGTGCAACGTCAAGGTGTAAAAG 2886 28 100.0 32 ............................ AACCAAGACCAAAAACTTTCAGATTATGAAGT 2826 28 100.0 32 ............................ ATAATAAAAATTTTTTATGATGTTTTTTGTAT 2766 28 100.0 32 ............................ ATATCATCAACCGGCTTTAGAAGGTAAGAAAA 2706 28 100.0 32 ............................ AATCAAGACCAAAGACTTTCCGATTATGAAGT 2646 28 100.0 32 ............................ TTTTAGATTGAAATAGTGTTGCAATATTACTT 2586 28 100.0 32 ............................ TTATTGCAAACTGTACGCACCTGAAATGATGA 2526 28 100.0 32 ............................ TTGGCAATCGAAAACACTGTTACTATTAACAC 2466 28 100.0 32 ............................ ATGTTATAAATTCATTTAAGGAAATTTACATT 2406 28 100.0 32 ............................ TACAAAACAAGGTCGATTTTAACAACCCCTAA 2346 28 100.0 32 ............................ TATATCTTTTTGTTTTAATCCTGCTGAAAAAA 2286 28 100.0 32 ............................ TGACGGTAATTGTCCTTTAACAATAATATGCA 2226 28 100.0 32 ............................ AAAATCTAAATTTTATGGTTTCAGATAATCAT 2166 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 2106 28 100.0 32 ............................ AAAATTAGTATCACTAAAGTTACTTACTTTAG 2046 28 100.0 32 ............................ TTTGGGTGTAGATATTTTGTTTTACGTCCCGT 1986 28 100.0 33 ............................ TAGACAGTCACCGGCACAAATATTAAAACAAAT 1925 28 100.0 32 ............................ TGATTTGTTGTATAGGTCCAGTAGTACTTTAC 1865 28 100.0 32 ............................ AAATCGATAATGTAAATAATCGCATTGACAAC 1805 28 100.0 32 ............................ TCTCTTCCATACAACCGGTAATTCATTTTCAT 1745 28 100.0 32 ............................ TAGAGTATTACGCAGCAAGATTAAATCAAGAT 1685 28 100.0 32 ............................ AAGAAAAGGATTTATAACAGTTATAGTATTTT 1625 28 100.0 32 ............................ ATAACTTCGCAAACTATGGCGGATTTCCGTTT 1565 28 100.0 32 ............................ TTGATATGTAACAGATTCAGCATTGATTATGC 1505 28 100.0 32 ............................ TTTACTCGGTCATCAAAACTGTTTGTGTCAAC 1445 28 100.0 32 ............................ TTTTTCGCCCTGATCGCCTTTTGCACCTGCAA 1385 28 100.0 32 ............................ ATGGCCCCTATGTCAATTGGCGGCATATAATT 1325 28 100.0 32 ............................ AAAATCTGAATAAGCAAAAAGATTTACATATT 1265 28 100.0 32 ............................ AAGGAAAATCCATTCACCTTCAATTAGACCTA 1205 28 100.0 32 ............................ TACAATGTTAGACTTTTTTATTTCTCTTGTAC 1145 28 100.0 32 ............................ AAAAACAAAATGCGATTGGTTTAATGATTTGG 1085 28 100.0 32 ............................ ACAATACAAACTTAAGCCCAATTTGCGATAAT 1025 28 100.0 32 ............................ TAAAGCCACGTAATAACTGCTGATTAGATAAT 965 28 100.0 32 ............................ TTCAGCAAATTTAAAATCACTTGTAAAAAACC 905 28 100.0 32 ............................ TACAGCTAATCCGTTCCCGACAGCACAACCGG 845 28 100.0 32 ............................ TCTGAAATAGCCAATATTTGCACCACTAAAAG 785 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 725 28 100.0 32 ............................ ACGTAAAGGAATTAGTTGCTCAAAATGCTGAA 665 28 100.0 32 ............................ ACATTGGGTTGGTTGGCGTTATATAACTACTG 605 28 100.0 32 ............................ ATTATTAATAATGATTCAAAATGGGAAAAAGA 545 28 100.0 32 ............................ TATTTTCCAATTTATCTAAATGTTTTTTATAG 485 28 100.0 32 ............................ GATAACTCTTTGTCGATTAGATTTGATACGCA 425 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 364 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 304 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 244 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 184 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33986-33485 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJL02000054.1 Aggregatibacter actinomycetemcomitans serotype d str. I63B contig00063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 33985 33 97.0 33 ................................C GTACAGTAATGGAAACAATGCCACCCGTAGCAG 33919 33 97.0 35 ................................T ATGGAAACTTTAGATATGAATAAAGCTGTTGAAAA 33851 33 100.0 34 ................................. ATCAATGGTACAAATTATAAATTAGGAATAGGTG 33784 33 97.0 35 ................................C TTGTCATATAGACGCTTGCGGAGTTTTTGTACTTC 33716 33 100.0 34 ................................. GCAGATCGTGGATGGGCAGAACACGGCATGATTA 33649 33 97.0 33 ................................T AATATTCCTTATGAAATGCAAACTTACCCACAT 33583 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 33517 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 96.2 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : GGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTCA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //