Array 1 63676-64568 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIONF010000002.1 Streptococcus agalactiae strain B7 NODE_2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     63676	    32	 100.0	    34	................................	TAATTGTTCTTTGTAATAGGCTTTTAATTTCTCT 	
     63742	    32	 100.0	    35	................................	AAAGAAAAATGGATACTTTATCATATACTGTGCTT	
     63809	    32	 100.0	    35	................................	CTAAAGAAATCACTTCAACCAACAGTCCTTCAAAC	
     63876	    32	 100.0	    34	................................	ATAGTCCCACATATTGCTATGAAAAAACGGAAAA 	
     63942	    32	 100.0	    35	................................	TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC	
     64009	    32	 100.0	    34	................................	TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 	
     64075	    32	 100.0	    34	................................	TATTTTATATTAAAAATAAGACTACCATAATTAT 	
     64141	    32	 100.0	    34	................................	AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 	
     64207	    32	 100.0	    35	................................	AGGTGGTATGTTTAAAATTTTTGCATCTTCAATTA	
     64274	    32	 100.0	    34	................................	GTCGTAAAGACGTAGCATATCACTAATTAGATCA 	
     64340	    32	 100.0	    35	................................	TAGCTGATAGCCTGCAATATACAACCATCCGTTTT	
     64407	    32	 100.0	    34	................................	ATCATATCTCTATAATTTCCTTTCATATCAACGC 	
     64473	    32	 100.0	    33	................................	TAATAATGATTATTTTTTTATTAATTCATTATC  	
     64538	    31	  78.1	     0	A....-.............T..A.T..C..C.	|                                  	
==========	======	======	======	================================	===================================	==================
        14	    32	  98.4	    34	GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT
# Right flank :  TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG

# Questionable array : NO	 Score: 9.18
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [5,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.80,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,1.01   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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