Array 1 782509-781689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQH010000001.1 Nocardia farcinica strain BJ06-0136 NODE_1_length_1093053_cov_39.528176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 782508 29 96.6 32 ..............T.............. GACCCGGACGCGATCACCGATTCGGCGTTGCC 782447 29 100.0 32 ............................. AGTGTGCAACAGTGGCCGCTTGGCTACAGTGC 782386 29 100.0 32 ............................. CCCTGCACACCCAACCCGAAGCGGACCGGGTC 782325 29 100.0 32 ............................. GGCAACCATGATGAGGGCCAGCGATTCATGAC 782264 29 100.0 32 ............................. GGGAGAAACGCCCGCAATAGTGGCGGCGCTTC 782203 29 100.0 32 ............................. TGCGAGACGTCGGTCCAGGTGGTGCCCATTAG 782142 29 100.0 32 ............................. GCGTGGCTAGGGGTGTCACACGTCGCCAGCGG 782081 29 100.0 32 ............................. ATCTCCACGACGGCGGGCACGTTCTCGATCGT 782020 29 96.6 32 A............................ ACCGCTGACGGCCCTGACATCGGCGACAGCCC 781959 29 96.6 32 ..............T.............. AGCGGGATCAACGGCGCGACTGCGGTGACCAG 781898 29 93.1 32 ..............T.............G TACTGGGATGAGGTCCAGCGCCGCCAGGTCGA 781837 29 96.6 32 ..............T.............. CCGGTACCGCCGCCGCCACCCCCGCCCCCGCC 781776 29 93.1 32 ..............T...........T.. GACGACAACAACCTATGGGTGCTGTGCGGCAG 781715 27 86.2 0 .............--........A.T... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGACGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGTTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTCGGTTGTGGGAACCTGTGCGGAGGTTCACGCGGGACGACGGAGATGTGGTGTATCCGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGAGGTATTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACAACTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGAACCTCCCAGTCGAAGGCCGCGCGGCGCCGCCCCTTCGCATTCCTAGACGTCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCATGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 899562-898086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQH010000001.1 Nocardia farcinica strain BJ06-0136 NODE_1_length_1093053_cov_39.528176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 899561 28 100.0 33 ............................ CTCGGCCAGCTTGAACTCGACCGAATCCGAGGG 899500 28 100.0 33 ............................ CCCACCGCCACCCCCAGGCAGATCTACTACATC 899439 28 100.0 33 ............................ CCGGTCATGCAGCACCAGCGATCCGGCCACCGA 899378 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 899317 28 100.0 33 ............................ CCACACCATCAGATCCGCGAGCGCGGTGGCCGT 899256 28 100.0 33 ............................ CCTGTTCGAGGGCCTGGACGAGACGCTGCTGCA 899195 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 899134 28 100.0 33 ............................ CGGTCAGGCTCACCGCGCCGACACCGACGGCGA 899073 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 899011 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 898950 28 100.0 33 ............................ CGGCGTGACCGTCGCCAGCGTCACCGGCGCGTC 898889 28 100.0 33 ............................ CTGGTCGTGAGCGCCTTCTTGATAGCGCTGGGC 898828 28 100.0 33 ............................ GATGAGCGTGGCTCGCACGGATGGGCCACGCGG 898767 28 100.0 33 ............................ CCCGTTCCTCACCGACGCAGCGCACGAGGAAAT 898706 28 100.0 33 ............................ CTGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 898645 28 100.0 33 ............................ CGGCGCCACCCCGCCGATGCCATCCCCGACAAA 898584 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 898522 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 898461 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 898401 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 898340 28 96.4 198 ..........T................. AAAGCTCTGTTCACCACCGACTGGCTGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGAGCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 898114 28 71.4 0 ...G..TG.....CG.TC..A....... | G [898087] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 22 28 98.4 41 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCTCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCGGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCGTCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCAGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.74, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 909339-908689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQH010000001.1 Nocardia farcinica strain BJ06-0136 NODE_1_length_1093053_cov_39.528176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================== ================== 909338 28 100.0 33 ............................ TAGACTCTTTTCTCGTGTTGTGTGATCGGCCGT 909277 28 100.0 33 ............................ CCGCGAAGGCGGAGGCGAGGACGAGAGCGACAG 909216 28 100.0 33 ............................ CCAGAGAGCCGGTCACCACGAGCGCGCCCGTCG 909155 28 100.0 33 ............................ CCACGGTCGCTTCACGACGTCCTCCTCTCAGGC 909094 28 100.0 33 ............................ CATGCGTCGTAGAGGGCGGTAGCGGTCGCCTCA 909033 28 100.0 33 ............................ CACCGGCCGTTCCGGGCTGCTCTCCTTGTCCGC 908972 28 96.4 33 ...................A........ CCCGTTTTCCGGCAACGTGACCTCTTCGGGTAG 908911 28 96.4 33 ..............C............. GCACCCCGTCCGGCGCAACAAGACCGCCCGCGA 908850 28 92.9 106 ..............C..........C.. CCCATCTGCTTGTAGGAGGACCATCGTTTCGGTGCGCCGAGCTCGACATGTTCCCGGCACATGCCGGATGAGCACGGTACGCCGATCCCGTTACCGCCCGATCCGC 908716 28 67.9 0 .........C.C.GCA..A..GC..C.. | ========== ====== ====== ====== ============================ ========================================================================================================== ================== 10 28 95.4 41 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GTCGCCCGATGTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTTCGTGGGCCTTGTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCGTGTCGCTCGCTAAGGTTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTCGGGAGGTGAGGAACCGACTGAAAGTGATTGAAAAAGGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CTCGGCTGGCAACGCCGCCGCGCCGCGTGTGCCCCACGCGTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTACCGCTTGCTACCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACGCACGACATCGGGAAGCTCACGCCGGCATTCGCGTGCCAGGTTCCCGAGCTGGCCGAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108820-108060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQH010000005.1 Nocardia farcinica strain BJ06-0136 NODE_5_length_635871_cov_39.156683, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108819 29 100.0 32 ............................. ACGCCGCCGCACTTCACGCACACCGCGATCAC 108758 29 100.0 32 ............................. GAGCGCTTGACCGGGATCATCGTCGAGCAGGC 108697 29 100.0 32 ............................. GGGGCGCCGCTGTATGAGTGCGTGGCTATCGC 108636 29 100.0 32 ............................. CCGTCGCTGCCCTCGCGCATGCCGCGCATGAG 108575 29 100.0 31 ............................. CGGGCGGCACGTCGAACCGCTTCGGGTCATC 108515 28 93.1 32 T.......-.................... CCGTGGACGCGGTACTGGTCGACCAGCACGTT 108455 29 100.0 32 ............................. CCATCGCTCGGGTCGCAGCCTTCGCAGTCAGG 108394 29 100.0 32 ............................. TGGGAGCCGGGGACGCGCTGGCACGAGCTGGC 108333 29 100.0 32 ............................. TCCTCCGCCGACTCCACCGCCAGCACCCGGTC 108272 29 100.0 32 ............................. CCTTGGTTCCCGGAGTGGATCCAGTGGCCGCA 108211 29 100.0 32 ............................. ATGCTCGGGAGCGAGCGCCGCTATCAGATCGT 108150 29 100.0 33 ............................. GCAGTCCTCTCAGCCTGTCGAAACAGCTCCCAG 108088 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGATCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGGCGGTCTCTCACGCGCCCCTTGGGAAGATCGCCGGCAACTGAAATGGGTTCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGTCAGGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGTGGAAATGACTGGGGCGCCACCTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTTCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGCGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //