Array 1 45720-43638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWOA01000017.1 Neisseria meningitidis strain Nm441102 Scaffold17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45719 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 45653 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 45587 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 45521 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 45455 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 45389 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 45323 36 100.0 30 .................................... CGAATATATCAAGTTGGCTCGGATGCTGAG 45257 36 100.0 30 .................................... TCCGCCCGCTTACTTGCGGCTGACGGGAAA 45191 36 100.0 30 .................................... TCCGCCCGCTTACTTGCGGCTGACGGGACA 45125 36 100.0 30 .................................... TCCGCCCGCTTACTTGCGGCTGACGGGAAA 45059 36 100.0 30 .................................... AGATTGCTTCACAAGCCAAGCGTTCGTCTC 44993 36 100.0 30 .................................... TCCCCCCCTTCATCATCGCACCGACCTGCC 44927 36 100.0 30 .................................... AAAAACTTTTTAGGGGGTCGGAAAAAATGA 44861 36 100.0 30 .................................... GTTTCTGAAATATCACAGCCCCACCCGACG 44795 36 100.0 30 .................................... ACCCGAAAAACGGCGATTCCTGTTAAATAC 44729 36 100.0 30 .................................... ATAAAAAATCAAGTAAATCAAAAATAATAG 44663 36 100.0 30 .................................... TAAATGCGGTTTATATTGCTAGGGTGCATA 44597 36 100.0 30 .................................... ATGCTTCTTCAACAGTAGATTCTGCATCGG 44531 36 100.0 30 .................................... TAAAAACGTGGGGTAAATTCGAAAGTACCA 44465 36 100.0 30 .................................... TAATATCTGTTACTTGTTGTTTTGTTAAGT 44399 36 100.0 30 .................................... CATATCAACAAGCAAGTCATCTCCACTAGA 44333 36 100.0 30 .................................... TGCACGATATGCTGGGCATTTTCCCGGGTA 44267 36 100.0 30 .................................... CGAATATATCAAGTTGGCTCGGGTGCTGCG 44201 36 100.0 30 .................................... GTTTCTGAAATATCACAGCACCACCCTGCA 44135 36 100.0 30 .................................... GTTACAATGTTTGTGCAGCAATAACGCACC 44069 36 100.0 30 .................................... GGTATAAATGCGGTTAATGTTGCTAGGGTG 44003 36 100.0 30 .................................... AACCCACGGCGGCACGCGCGAGGCGGTTTT 43937 36 100.0 30 .................................... TTTAATGAATTTACTAAGCTGGATAAACAG 43871 36 100.0 30 .................................... TGAGCATAAAATTTTAGTAACCTATGTTAT 43805 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGTTTCCTTTG 43739 36 100.0 30 .................................... TATGACTTTGCAAAATGCTGTTCAGTCTTT 43673 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CGGTTTGCCGGAAGAAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGGATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //