Array 1 2305524-2302452 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012148.1 Lacticaseibacillus paracasei strain L9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2305523 36 100.0 30 .................................... CGATGACGGCGAAATAGTGACGACTCCTGC 2305457 36 100.0 30 .................................... GCCAAAGCCAAAAACGGTTAATGAACTTGC 2305391 36 100.0 30 .................................... ACGAGATAGCGCCACAAAATCATAAGTTAC 2305325 36 100.0 30 .................................... GCTCCAGATACTCGGATAACGTCTCCGGGG 2305259 36 100.0 30 .................................... TCATCAAAGCAATGAACAAACTTGATGAAT 2305193 36 100.0 30 .................................... ACATGGAACTCGACCGCACGCTATCTAACT 2305127 36 100.0 30 .................................... ATGAAGAAGAACGTACCATTGGTGATTTGC 2305061 36 100.0 30 .................................... AATCAGCCGGATTAGTGCTGTCTGCCTGTG 2304995 36 100.0 30 .................................... CAGTAGACTTCTCTACAAAGGATTCCCTTG 2304929 36 100.0 30 .................................... ATTCCGATCAGGCTGTGAAGTCAGTCAGTG 2304863 36 100.0 30 .................................... CAGTAGCAACATAAACCCTAGTACCAATAA 2304797 36 100.0 30 .................................... CAGTAGCAACATAAACCCTAGTACCAATAA 2304731 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 2304665 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 2304599 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 2304533 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 2304467 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 2304401 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 2304335 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 2304269 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 2304203 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 2304137 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 2304071 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 2304005 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 2303939 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 2303873 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 2303807 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 2303741 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 2303675 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 2303609 36 100.0 30 .................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 2303543 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 2303477 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 2303411 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 2303345 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 2303279 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 2303213 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 2303147 36 100.0 30 .................................... GGGATTGTGGGCTGACGATAGATATACGCT 2303081 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 2303015 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 2302949 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 2302883 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 2302817 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 2302751 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 2302685 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 2302619 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 2302553 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 2302487 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 47 36 99.6 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //