Array 1 2546-1796 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMX01000021.1 Cronobacter sakazakii strain MOD1_LR728 LR728_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2545 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 2485 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 2425 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 2365 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 2304 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 2244 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 2184 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 2124 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 2064 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 2004 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 1944 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 1884 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 1824 28 85.7 0 ......................C.T.TC | T [1802] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53005-53582 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMX01000059.1 Cronobacter sakazakii strain MOD1_LR728 LR728_contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53005 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 53066 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 53127 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 53188 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 53249 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 53310 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 53371 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 53432 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 53493 29 100.0 32 ............................. AGATTTACGAAATAGACCCGATTCAGTGCATC 53554 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CGCTTAGCAACCCTAACGCTTATGCATTCCTCCTGTTCCCCGCGCGAGCGGGGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26479-27422 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMX01000063.1 Cronobacter sakazakii strain MOD1_LR728 LR728_contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26479 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 26540 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 26601 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 26662 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 26723 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 26784 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 26845 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 26906 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 26967 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 27028 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 27089 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 27150 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 27211 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 27272 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 27333 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 27394 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TATGGCGCTGGCGGTTCCCGGTGCAAACGCCTGTGTTCCCCGCGTGAGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMX01000075.1 Cronobacter sakazakii strain MOD1_LR728 LR728_contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 111 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 172 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 233 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 294 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 355 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 416 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 477 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 538 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 600 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 661 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 722 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CGAGCGGGGATAAACCGGTTCTTTAACGCTCTGGTGACGCTTACCGTATG # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //