Array 1 4433-5181 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032152.1 Thermosynechococcus elongatus PKUAC-SCTE542 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 4433 36 100.0 36 .................................... GAACATCACCAATCCACGCCGCCCCCTGACCTACAG 4505 36 100.0 34 .................................... AATACTTGCAATGCTTGCTGGAAGTACTTGACAT 4575 36 100.0 36 .................................... TCAAACAGCAACGACTGACTGCGTTGAATTTTCCAG 4647 36 100.0 36 .................................... AATTGGAACAGTCGTCATTCATGTCTTGCCTCACAA 4719 36 100.0 38 .................................... ATACTAGAATCGCCGCATTACTTAAAATACAAGCTTAT 4793 36 100.0 35 .................................... CGATCCACTTGACCCGCGAAAACTACCCCTGGGGT 4864 36 100.0 35 .................................... ACACTACGCCTCAAATTTATACATTTGATTGGTCT 4935 36 100.0 35 .................................... CTCAAAACGGGTTTAACCTACCGTTTTGATGAAGA 5006 36 100.0 33 .................................... TTTTTAATATCTGAGCCTTTTATAGGTAGTGTT 5075 36 100.0 35 .................................... ACGGAGGCAGAGTGGCAGGCGGCTGTTCAAAAAGA 5146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 100.0 35 GTGCTTCTACCTCTGATGCCGCAAGGCGTTGAGCAC # Left flank : ACTTCCGTAGGAGCGGGCGATCGCCGCCAGTACCAATAGCCCAATCCCAGAGCGAGAATCAGGAGCCATGCCCACGGATGGTCATTCACCCAGCCACTCAACAACAAAAGAATGATGGCGGCAGCAACAGCCATGTCCTTTACCCCAAGCAAGATCCTCTGTTTGTTAGCTTACCTTGACTAGTGAGCAGCACTCAAATGCCCAAAGCTCGAGAAAGTACAGGCTGAGTTTTCTGCCCGCTTTTCAAAAATGCAAGCACCTCTGGACTGAAATATTCTCTGGATTGGTCAATATTCAAAAATAGCCTCTTGACTTGATTTGAGAGTTTTTGTTAGATTTAGAGGTGCTTGAAAATCTCTGAACCTATTCCCCAGAGCGGGATTGACAACTGAAGACGAGGCTAAACTAAAAATTTTACAGCCGCCAAAAAATCAAGTGCCTGAGGTGCTTGAAAACGGGGTGTGCTAAGCTAGTCCTAGAGGCACTTCCAGAGTGCCACT # Right flank : CGCGCATAATCATGCGATCGCCACAGGAATTTAGACAAGGCGCGGCCTTCAATAAATTCAAATAAATTCAATAAAAAGGACTATATCAACAATCCTCCCATGCGCTTCACCCCTTGCGACTGCTAGGATGGGAGTTACCCTTAAATTTTCAATTTTTCAATAAGGATTTCTGACGCCAATGGATGTTATCCCCGCCATTGATTTACTTGACGGCAAATGTGTGCGCCTAGTGCAAGGGGACTATGGTAAGGTTAATGTTTTTCATGATGATCCCCTAAAAGTCGCCCTCTACTGGCAGCGGTTGGGTGCTCCCCGCCTGCATGTCGTTGACTTGGATGCTGCCAAAACAGGAGAACCGCGGAACTACGATCTTATTGCCAAGATTGTTGCCTCCCTTGAAATTCCTGTGCAGGTGGGGGGTGGCTTGCGATCGCGCCAAGCCGTTGCGGAACTCTTTCTCCAAGGCGTCAATCGTGCTATTTTGGGCACCGTGGCTCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTCTACCTCTGATGCCGCAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 504222-503110 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032152.1 Thermosynechococcus elongatus PKUAC-SCTE542 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 504221 36 100.0 39 .................................... GACTGATTACATTTTAAGTATAAATCAAAAAATCCGCGA 504146 36 100.0 34 .................................... CCCCAGTGGGCAAATCGGCCGGCGTAGCCACCGA 504076 36 100.0 35 .................................... ACTTCCCGTCCAAGCTTGATTACAAACGGTTTCCC 504005 36 100.0 33 .................................... TCCCACAGGGGCAGGCAAGACGGAGATTTTCTG 503936 36 100.0 37 .................................... TCTAATGCAGAGACATTCACTAAGTCTGGTTGAAATA 503863 36 100.0 38 .................................... GTTAACACGAATGTCAACCAAAATGCGGTTTGTTTCTT 503789 36 100.0 35 .................................... CACTTCGGCCAAAAGACTGATTACGTGATAATTTA 503718 36 100.0 35 .................................... CTGGCCTTAAATTGATCAAGGTTGCGCATTTGCAA 503647 36 100.0 36 .................................... TCCAGCCATACGTTTTCTACAAATTCAATAGGGTGT 503575 36 100.0 38 .................................... CGCAGTACTTGAACTTCTAGGGATTCAAGAAGGGAAGC 503501 36 100.0 35 .................................... ACAAGCTGTCGAAAGCTTGTGCACGAAGGTGCCAT 503430 36 97.2 37 .........G.......................... GATATTGGACGTACAGATGTTACCTGTCCTTCAGAAT 503357 36 97.2 35 .........G.......................... TCCCGTCATTTGCTCGACTCTTCCCATCAAGCCAA 503286 36 97.2 35 .........G.......................... TGCCCTTGACTTGGTAGAAGAACTAACCCATGCAA 503215 36 97.2 34 .........G.......................... GCTGAAGTGCAGGAGCGATATCCTCACCTTCAAT 503145 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 99.3 36 GTGCTGGGAACCTTTCCCAGCCGAATAAATGGAAAC # Left flank : GGGATTGAACCATAACATCCTCGTTTGGTGGAAGGAACCCTAGGATTCAGAATTGGCAAACTGTAATATCCAATACTGAACTATTTTAATTTTTGCCCTAGGGAACTACTCGCCATAATAACAAATGTTTCCTCCGTCAGGAGCTTCTGACGAAAAAATCTTAGCCTTGTCCAAAACACGACTTTTCCTCTAGGGAGCGGCCTCTCTGGTCTGGGTTCCAACATCTGATGACTTCACTTGTGTAGCGATGCAAGCACCTCTGGACTAAAATATCCTCTCAGCTCGGCAATTTTCCCAAACGCAGTCTCTGCAAGGCTTTGATGAATTTCTAACAGATTTAGAGGTGCTTGAATTTTCCCAAAACAGGCTTCCAGAGAGACTTTGACTGACCTCATCACTGCGGATCCAAAAATTTTACAAAAACAAAAAAATCATCTCCCCTAGGTGCTTGAAAATGATCTGTGCTATGCTACTTCTAGAGCCTCTTCCAAGGAGGCGGA # Right flank : TGCTTAGGAGCCTTTCTCAGTCGAACAAGTGAATGCAGGGGAAGCCTTTGGCCAGGGACATCGTTTATCCTAGAAGTCAGTCCCTAATGCCATCGCATCATTGCCTCAATGGCCTTTCATCTCCCCCAACTGAGCTGCAAACTGCGTCCAGAGGTCGCTGCCCTCCAGCCCGAACTTGTGCAGTGGCGGCGCTATTTGCATCAGCGTCCGGAATTGGGCTTTCAGGAGCACCTGACGGCGGCCTTTGTCAGTGAAAAACTGCGGCAATGGGGCATTCAGCATCGCACAGGCATTGCGGAAACCGGAATTGTGGCGTTGATTCCGGGCACGCGACCGGGGCCAGTGCTGGCGATTCGCGCCGATATGGATGCCTTGCCGGTGCAGGAGGAAAACGATACGCCCTACCGCTCTCTCCATGAGGGGAAAATGCACGCCTGCGGGCACGACGGTCACACAGCGATCGCCCTTGGTACGGCGAAATACCTTGCTCAGCACCGCGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGGGAACCTTTCCCAGCCGAATAAATGGAAAC # Alternate repeat : GTGCTGGGAGCCTTTCCCAGCCGAATAAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 1394482-1395818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032152.1 Thermosynechococcus elongatus PKUAC-SCTE542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1394482 36 100.0 34 .................................... CGGGCAACAAATCGTGTTTGCCACGACCGCGATT 1394552 36 100.0 36 .................................... GCCATCGTCGGCGCCTAAGTTACCAGCGGCGATAAC 1394624 36 100.0 33 .................................... GTTTTTGCCGTTCATCCTTGAATGAAATTTTGA 1394693 36 100.0 34 .................................... ACCTGTGAGCGCCTGAATATGTCTCGCATTTAAC 1394763 36 100.0 38 .................................... TTAATCAAGGCGTCGGCAACAATGTTCAAAAGCCGCAT 1394837 36 100.0 44 .................................... TCTTTGGGCAGTTCAAAGAATTTTTGGCCGTACTTAATTGTACG 1394917 36 100.0 44 .................................... TCTTTGGGCAGTTCAAAGAATTTTTGGCCGTACTTAATTGTACG 1394997 36 100.0 37 .................................... GTTTTGGGGTCGTCGATGACGAACGCCCCCTTAGTAA 1395070 36 100.0 37 .................................... GTTTTGGGGTCGTCGATGACGAACGCCCCCTTAGTAA 1395143 36 100.0 33 .................................... ACTTCAACAAGCATTTACCGCTTTCCCTAGGGT 1395212 36 100.0 35 .................................... AGCCAAGTCTGGAGAGCTAACGCCAATAGCAGCGG 1395283 36 100.0 37 .................................... CGACTGGATGCATTGACAATAACTAAATGACCCATAC 1395356 36 100.0 34 .................................... ACGCAGGCGGAAATCATTGAAAACAAACCTGCGT 1395426 36 100.0 35 .................................... TACATACGCTGAAACAAGTCCAGAGAAGGTTATAA 1395497 36 100.0 35 .................................... CCGCGCGGCCCCTTATTCATAGGTTCGTAAACAAC 1395568 36 100.0 38 .................................... TCACTAATGTGAGGGTTTATGTCCAAGAACAGTCGAGC 1395642 36 100.0 33 .................................... TATTTCCGCATCATATTGATGCAGATAAAGTAT 1395711 36 100.0 36 .................................... TCAAAATAGCCTTTTTCTCCAATAATTTCCTCTACT 1395783 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================================ ================== 19 36 99.9 36 GTGCTGAGGCTTGTCCTCAGCCGATTAAATGGAAAC # Left flank : CCCATTCACGACCAGTTTACAGCGCTTGTGGAGTGCTTCACTGCGGCGTACCCAATCTGCCAGCGGCGGTGCCGCGCACGGCTACCCAAGCTCTCACGAATAGCACTTGGCCCTATATTCTTTGCCTCGCTGACCATGGCGATCGCGCCTTTGAATTCTCCCCTGCCCTTGCCAAGGGTCTCGTGGTCAAACAACACCATTTAGTGCATCCCGATGTGCGGGTTGTTTTTCCCGATCTTTAGGGAGCGATCAAGCACCTCTGGACTAAAATATCCTCTCAGCTTGGCAATTTTCTCAAACCCAGTCTCTGCAAGGCTTTGATGAGTTTCTAACAGATTTAGAGGTGCTTGAATTTTCCCGAAACAGGCTTCTAGAGAGACTTTTGCTAGCTTCATCACTGCGGATCTAAAAATTTTACAGAAACAAAAAAATCATCTCCCCTAGGTGCTTGAAAATGACCTGTGCTATAGTAGTCCTAGAGCACCTTCCAAGGGTGCACT # Right flank : TTTATTGACACAGGGGTAATAGCAACGTCACAAAGTAAAACACAAGGGGTGCGGTAAAAACATAGCTATCAGCGCGATCCAAGATGCCGCCATGCCCCGGAATCAATTGGCCAGAATCTTTGACGCCGGCATCCCGTTTCATCATTGACTCGGTTAAATCTCCTAGGAGACTGGCAATGCCAATCATGAGGCCAAACATTGCGCCCAAAAGCCAAGGGAGGGGCCAGCCAAGGGACTGTGCTCCCCAAAGGGCGACGCCTAGACTCCCCAAAACGCCAAACACTGCCCCTTCCACAGTTTTCTTGGGACTGATGTGGGAAAGTCGTGTGCGGCCAAAGAGCTTACCAACCGCATAGGCACCAATATCTGCTGCCCAAATACAGCCAAAGGCCAAAAGGGTCGCCTGTAACCCCAAGGGCAAAGCGGTGAGTTGCAACTGCTCTGGCCAAAATCCCCCCAACGGTAATGTTGCCTGTTGCTCTAGCCCCCGCAGGCGCACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGAGGCTTGTCCTCAGCCGATTAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 1877389-1875700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032152.1 Thermosynechococcus elongatus PKUAC-SCTE542 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1877388 36 100.0 35 .................................... AAGGATTTCCTCTGTATTTTATTTTGCGAATACTT 1877317 36 100.0 42 .................................... ATTCCGGTCAGTAACGCCATACTGAATGCGGTACCGACGGAA 1877239 36 100.0 36 .................................... AAGGATTTCCTCTGTATTTTATTTTGGCGAATACTT 1877167 36 100.0 35 .................................... TTTTCAGGTCGGGAATTGTGATTCCCGACAGGAAT 1877096 36 100.0 34 .................................... TCTAATACGTCGTAATAAATGTCGATAAGTTTAA 1877026 36 100.0 36 .................................... TACAGGGAAACAGAAATTATTTATATTCATCTAGGT 1876954 36 100.0 35 .................................... CTCATCGGGGGTTAGTAATTTGGCAAGGTTTTGTT 1876883 36 100.0 38 .................................... ACACTTAAATCTGGGAGCATGTTATAAATTCCCAGAAA 1876809 36 100.0 35 .................................... ACTATCTGCAACCTTTATCGCCTCTCTCACACTAG 1876738 36 100.0 36 .................................... TGGCGGCTGGAAGAAATCGCAAAAAGACGGCAAGAA 1876666 36 100.0 36 .................................... ACCTTGCCTTTCGTTGTCATGATTACATCTCCTGTT 1876594 36 100.0 34 .................................... ACGCCAGAGGAGTACCGTGAATGGGTTAGCAAAA 1876524 36 100.0 34 .................................... GGCTTTAAGACTTACTGGCATCGGGAAGTAATAG 1876454 36 100.0 35 .................................... GAGTCATTTGGGAAGTTGTAAATCAAATTCCCTGT 1876383 36 100.0 37 .................................... ACCCTTGGCGGTAATTCAGGCAAATTTCTGTAAAAAC 1876310 36 100.0 36 .................................... TTTTACAAGCTCCGATGAATAATTTAAGCCAAACAC 1876238 36 100.0 39 .................................... TCTGAGGAGCAGCGTAAAATTCTTGAGGGTAGATTGTTG 1876163 36 100.0 37 .................................... GGGGCGATGCCGATGCCCTCCGTTAGGTAAGCCTTGG 1876090 36 100.0 34 .................................... TTGAAGCCTTATACCAACGTCAAATTAAAAAGCT 1876020 36 100.0 34 .................................... TTTCGAAGTAACTAAAGGACATACAGCCTCCTTG 1875950 36 100.0 36 .................................... AAAGGTTTCCCATCGCAAAACGCGACGGGTTTGTAA 1875878 36 100.0 36 .................................... ATTGAGCGGTAGAGTCCGCTCAACTCGTCACCGCTG 1875806 36 100.0 35 .................................... TCAAGGGTTTGCATAGCAGCCTCCTGCTAACGACA 1875735 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ========================================== ================== 24 36 99.9 36 GTGCTGAGGCTTGTCCTCAGCCGATTAAATGGAAAC # Left flank : GCTCTTGGCATGGGTAGCCACCACTCAAAAGCTACTGGTGGGGGCGGGTTTACTCTTGGCCTACACCACGGGCTATGTGGTGCCCCTCATCTTGGTGGGGACTTTTAGTGGGGCGCTGCAAAAACTGCTGGCTCTGCGGCGGTGGTCAAGTTGGATCACGACTTTGAGTGGCGTGCTACTGATTGCTTTTGGGGTGATTGCTTTGGCGATTCGCCTCTAGGGTCTTCCCATCTTCCGCCGGGCAGCTATGCAAGCACCTCTGGACTAAAATATCCTCTCCGCTCGGCAATTTTCCCAAACCCAGTCTCCACAAGGCTTTGATGAGTTTCTAACAGATTTAGAGGTGCTTGAATTTTCCCGAAACAGGCTTCTAGAGAGACTTTTGCTAACTTCATCACTGCGGATCTAAAAATTTTACAGAAACAAAAAAATCATCTCCCCTAGGTGCTTGAAAATGACCTGTGCTATAGTAGTCCTAGAGCACCTTCCAAGGGTGCACT # Right flank : AACGCGATCGCTCTATGGACGGATGAGCACTATGGGGGTTTGCTCATCGGCATTGCCCGCAGGATTTTTCTTCAGGGCAGCGGTCAGTAATTGCGTAGAGACTCCCCTGCTAGCGGCAAGAACTTTGACCGCACCTAAATCGTTGACATCCACAATAGCGATGCCCAAACCCGTTTTTGCGGCAAGGTCATCCACGATGGCTTGGGGGTTAGCTGGCCCCATGACAATGAATTGATCGTAGGGAGGGAGGGTACCTGTCACGTCATCAATGAGGCGAGCTTGTTCACCGGCCAATTGATAAAAGCCTCCTTTGTGGCCAAACAGTTTGGCGATCGCCCCCCCCAAAAAGGCCAAGAGTACCCGTAGCTCGCCCACCTCCTCGACCAAGGCTTGCATACCACAGGCCGTTGCCAAACTAGAAGTGGGCAAGAAGAACTGGCACACCCGCGTTGCAACCCAGCCGGGGCGCAGTTGGGCGGGATCCTTGAGGCGGCCTTGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGAGGCTTGTCCTCAGCCGATTAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 5 2006007-2004988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032152.1 Thermosynechococcus elongatus PKUAC-SCTE542 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2006006 36 100.0 34 .................................... CTGAGCTGGAAGTGCCTGTTTATGCCGCCAACAA 2005936 36 100.0 35 .................................... TTAAGCCCCAGACCCAGCATTTTGCCCACCCATTG 2005865 36 100.0 34 .................................... GCAGAACAGTGGAAGGATCGATTAAAGGATTTTT 2005795 36 100.0 33 .................................... ATATCTTCTACCCCTCATCCAGATTTTCCCCAA 2005726 36 100.0 33 .................................... GTTTTTTGGCATCCTCAGGATAATAATTCAGTT 2005657 36 100.0 36 .................................... GGAACTGCTCCGCCACCTCCAAACCGCAGGGTGGAA 2005585 36 100.0 35 .................................... TCCCAAATGGAATAATTTCGTGCCCGCATCCATAC 2005514 36 100.0 34 .................................... AGACCGACAATCCCAGATTTATTTAAGCCTAGCA 2005444 36 100.0 38 .................................... CTAGGCAAGGCTGTCACGGGCAAATCCGCCACTGTTGA 2005370 36 100.0 34 .................................... TTTTCATCTACAGCAATGGAATTAGTTGCAGGTG 2005300 36 100.0 33 .................................... ATTTTTTCTGACTGGTCAAATCAACACCCTAAA 2005231 36 100.0 36 .................................... TCCCTTGGTAGGGCGGTAATAGGTTTAACCCTTGGA 2005159 36 100.0 31 .................................... TCACCCAGAGGACCTAAACCGCACCCAACAA 2005092 36 100.0 33 .................................... TATCCATAATCTCGGCTAATTTTTCCCTAAAAT 2005023 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 100.0 34 GTGCTCAACGCCTTACGGCATCAGAGGTAGAGGCAC # Left flank : GATGCCCTTGGATGTCGAGTACTTGGTTTTGAAAGAAGCGATACCACGTTTGCACTTGATCTGAAAGACAACGGATGCGGAAGCGTGAAGCTCGATTCAAGTAAATGACCCCCTCACGATTTGGCACTCCGGGAATAGTGCTCAGGCGCAGACCCCTAGGCAGGTTTTGATGGCCAGATTTTTGTAACTGTTGTTTAATGGCAGAGTATAGTGCGTAGCCATGATCTGCTGGCAGCGTTTTCCCACGCAGGCTGTAGTGGATTTCAAGAAAGTGATTTTGGTCGGTCATGACGCCACTCTCAATCCCGGCATGATGTTGTATATGAGCCTCTGGAGCCTTGCCAAGGGTAGCCAATGTCTATTTGCAAGAGTCATGATAACCAATGGCCGATAGTTGTAAACTTACAAAAATTTTAACTCCTATTGTGGGTAACTACAGGGAGCAAAAAGTTTTTGCGTGAAAATTTTTATTTTTGTTCAAGAAAGTTAACTGATCACAC # Right flank : CGTGGCACTCTAGAAGTGCCTCTAGGACTAGCTTAGCACACCCCGTTTTCAAGCACCTCAGGCACTTGATTTTTTGGCGGCTGTAAAATTTTTAGTTTAGCCTCGTCTTCAGTTGTCAATCCCGCTCTGGGGAATAGGTTCAGAGATTTTCAAGCACCTCTAAATCTAACAAAAACTCTCAAATCAAGTCAAGAGGCTATTTTTGAATATTTCCCAATCCAGAGAATATTTCAGTCCAGAGGTGCTTGCATATAGTCCTCTTTGTAAATGAAAAGAAGGAGATGTGCTTATCCTCCGTGTTGGCTCTCACGGTTTTGATCGTCTTTCATCTCTATGGCTGTACTAGAAGATTTTGAAATTTTGCTCTGACACTGGCCATGCCCCTGAACGGTTGCAGGCACGCACCCGCTCTATGCATTGGTTGCACAGTCCTACAATTAGGAGATCATCTTCCTCCGTCAGCACTTTTTCGAGCTGCCAGCGCAACTTTTCCCGCTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTACGGCATCAGAGGTAGAGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //