Array 1 224325-223818 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAO01000004.1 Pectobacterium odoriferum strain Q142 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 224324 28 100.0 32 ............................ TGACGGAACGGGCAGGGTTTTACTCTCTGATC 224264 28 100.0 32 ............................ GTTAACTCTCCCAGCGTCGGGTGAATTAATGT 224204 28 100.0 32 ............................ AAATACCGGATCGCCTGTGCGGCTCCTCCGAT 224144 28 100.0 32 ............................ TTCCGCGCAACAAAGTGGCTCAACTAAAGGCC 224084 28 100.0 32 ............................ TGTTCACGTGATAAGTTTTCAGTAGATGAAGT 224024 28 100.0 32 ............................ AACATCGATGATCTGCCGGACATGCCGGAGAT 223964 28 100.0 32 ............................ GAAGTGTCGAAATGGTTACGAGCGAATCTGGA 223904 28 96.4 32 ...........T................ TGGCACTGGTCCATAGGCGCTGGAGAAGATGA 223844 27 75.0 0 ...........T.C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTAATCCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAAGTGATATTTCCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 232902-234310 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAO01000004.1 Pectobacterium odoriferum strain Q142 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 232902 28 100.0 32 ............................ GATACGCTCGCCAATCTGGCGACGAATGGGTT 232962 28 100.0 32 ............................ TGTATCAGGATGCAACGCGTAGCGATGAGTTA 233022 28 100.0 32 ............................ GTACGCAATGGCTGCGTGATCGCTTGCTAAAT 233082 28 100.0 33 ............................ CTGTGCCTTCCAGGTCGAGGGAGCCACCGACAG 233143 28 100.0 32 ............................ ATCACTCACGCTGGCAAATCGCCTGTATCAGG 233203 28 100.0 32 ............................ ATCTGGAATCATTGGTTTCTCGATGTTGTCGA 233263 28 100.0 32 ............................ TGCAAATAGCTATCATCAGCGTCACCAAAACT 233323 28 100.0 32 ............................ CGTCGCACTTGCTGGCATGCTGGACGTCATCA 233383 28 100.0 32 ............................ ATCGTGGATGGACAGGGGCGAACCAGCCAAAT 233443 28 100.0 32 ............................ TCAAGCCCTGTCACATCAGACGATACGGAAAT 233503 28 100.0 32 ............................ AGTATCAAACGTTTGGTTTTCCCGAATACATC 233563 28 100.0 32 ............................ GTTGGCACCTTGTTAGCCCATGACTTCGTTGC 233623 28 100.0 32 ............................ TGAGTCGCGCAGGTCTGCGTTAACAGGTCGCT 233683 28 96.4 32 .................T.......... TGTGTGAGATAGAAATGCATGTCGCCTGTGTC 233743 28 100.0 32 ............................ AGTAGAGGCATTAAAGGTCATGGACGCATGGG 233803 28 100.0 32 ............................ TCGCGTGCTGACTCATGGCTGCGATCAAAATC 233863 28 100.0 32 ............................ GCACTGGTGCTGCCAGTTTTTCAAAGATGGAT 233923 28 100.0 32 ............................ GCACTGGTGCTGCCAGTTTTTCAAAGATGGAT 233983 28 100.0 32 ............................ TCGCGATGTTACATCCGCAGCGTAAAGTATTC 234043 28 100.0 32 ............................ AGCAGTTTGATACGTCGCTGGCGGATTTTGAC 234103 28 100.0 32 ............................ TCGCGATGTTACATCCGCAGCGTAAAGTATTC 234163 28 100.0 32 ............................ AGCAGTTTGATACGTCGCTGGCGGATTTTGAC 234223 28 100.0 32 ............................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 234283 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAATACAGCGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGATGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 242633-241645 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAO01000004.1 Pectobacterium odoriferum strain Q142 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 242632 28 100.0 32 ............................ GGACGTACTCATCGCTAGCACACACATTAAGA 242572 28 100.0 32 ............................ TGTGTCAGCAGGGCCTTTCCCTTTGTTTACGC 242512 28 100.0 32 ............................ GCTTAGCGATACGATCAAGGCTTGCGCCGATG 242452 28 100.0 32 ............................ CTGCCATTCGTTCCCCTTTAGCAATTGGACGG 242392 28 100.0 32 ............................ CATTCCTGCGCCACCATTTTCTTTTGTTTCTT 242332 28 100.0 32 ............................ AAATGAACAGATTTTCTCGCGCGCGACCTTCC 242272 28 100.0 32 ............................ AATGAATTATCTAATTGATGATATTGGCGTTG 242212 28 100.0 32 ............................ ACCATAGCCTTTCGGCTGGCCTGCCATCCCAT 242152 28 100.0 32 ............................ GTGTCAGCGTCACGCAAAATTGCGAAATTATA 242092 28 100.0 32 ............................ ACCAGCATCGCGGGTTGTTGTGAAGTTCTGGA 242032 28 100.0 32 ............................ TGGCGCAATAGTCGGCTGTGTACCGGACCGTA 241972 28 100.0 32 ............................ AGCATCAATGGAGCGCATGAAATTAACTGACT 241912 28 100.0 32 ............................ GCTGGTCCGCGTCGAACTGATTCTGCAGCAGA 241852 28 100.0 32 ............................ TATCCCGTAATCACAGCAGCAGGCTTTTACGT 241792 28 100.0 32 ............................ TGCGGCGGTTATATCTTTCATGGTGCAGCAGG 241732 28 100.0 32 ............................ GGTAGGTGAGGTTGCGCGGCAAGTTGGCGTCA 241672 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTATATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGTTAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //