Array 1 166201-164461 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVP01000001.1 Salmonella enterica subsp. enterica serovar Onireke strain BCW_2901 NODE_1_length_575506_cov_3.78401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 166200 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 166139 29 100.0 32 ............................. CAAGAGTAAAATCCTGAACTTTCGGCGCTCCA 166078 29 100.0 32 ............................. CCAAATTGAATCTGGCTATCCATATAAGACAA 166017 29 100.0 32 ............................. ATTTCGTCCGTGAACGGTACAGCGATTTATAA 165956 29 100.0 33 ............................. CCAGCTTACGCTATTTACGACGCTATTGAGCAA 165894 29 100.0 32 ............................. AAAGATGAAAAATAACGGCAGTACGCCAGATC 165833 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 165772 29 100.0 32 ............................. GCGGCAGTGCAGGGAGCAAAAACCCTGAGCGA 165711 29 100.0 32 ............................. CCGCCGCGAACAACGCCGGGGTAACGAAAAAC 165650 29 100.0 32 ............................. TGATACCAGTGATTTTATCCCCGTTTAAACGC 165589 29 100.0 32 ............................. CTCAATGACATTAATTATCCGGTTATGGATGT 165528 29 100.0 32 ............................. CAGCTGAGCCGCACCGGCCTCAACCGTTACGC 165467 29 100.0 32 ............................. GTTCGATATGAGCAATAAAGAACCTGACGAGG 165406 29 100.0 32 ............................. CTGACGTTTGTTATGAAACCGGTATTGGCATC 165345 29 100.0 32 ............................. TGTTTGCCACGGAGGCTGCCACGTATACCGGT 165284 29 100.0 32 ............................. CCTGTAGCGCTGTTCCATTTCGCCTTCGGGTG 165223 29 100.0 33 ............................. CTGGATAATATCCGTCCCTTCGCGATGGCTTGT 165161 29 100.0 32 ............................. CAGGCTCCGCAGCAGAATAACAAAATAGAGAT 165100 29 100.0 32 ............................. ACAGTTTTTCGAACTCAATCGGCTGCGCAGCG 165039 29 100.0 32 ............................. CTCGGCAATATTACGCCATTGGTAGAGGTGAT 164978 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGGC 164917 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 164856 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 164795 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 164734 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 164673 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164612 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 164551 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 164490 29 96.6 0 A............................ | A [164463] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185400-182746 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVP01000001.1 Salmonella enterica subsp. enterica serovar Onireke strain BCW_2901 NODE_1_length_575506_cov_3.78401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185399 29 100.0 32 ............................. TATAATCGGCGTCCATATATCTGGATATTTAC 185338 29 100.0 32 ............................. ACTTCACCCTCATTTCCTTTGTGAATTTGTTC 185277 29 100.0 32 ............................. TGCTTCCGTCGTATCCCACTGGCAGGTTAGCT 185216 29 100.0 32 ............................. GTAGCGGTTAAACCCGCTGCGGCTCGGAACGG 185155 29 100.0 32 ............................. GTTGGCGGAGAGTGAGGCATATACATACCCAT 185094 29 100.0 32 ............................. CGATAGACGGACGCACCAAAACCGATTATGAG 185033 29 100.0 32 ............................. CGCAAATATCCCGACGCCGGGAAACAAATATA 184972 29 100.0 32 ............................. CCGCCCCACGCTAAATGCTCTTTCCGTTGTGT 184911 29 100.0 32 ............................. TGTTAGCGCCAGCTTAATGGCCGTGCCGTAAG 184850 29 100.0 32 ............................. AAAATCTTGTGTCAGTCTGGAATAACCGAGCA 184789 29 100.0 32 ............................. CCGGTTGTCCTTGTAATGGGGGGTCATTTGTT 184728 29 100.0 33 ............................. TTTTGCAGGGAAACTGGAAGACAAGATGCTGGC 184666 29 100.0 32 ............................. ATCGCTCCGTTCGCGTCGAACACCCGGAGGGG 184605 29 100.0 32 ............................. CCGGTGGGCGATCCATCACGGCTTTATACAGC 184544 29 96.6 32 A............................ GGCCACGTCGCGAGCAGCGTGGCTTTTGCCGC 184483 29 100.0 32 ............................. CCCAATATTTCGGAGTGGCCCAACGACGCCGC 184422 29 100.0 32 ............................. AATACCCTGTAGTTTCAATTTCTGCAGGTGGG 184361 29 100.0 32 ............................. CCGAGCAGCAGGCCATGATCGACGCCTACGCC 184300 29 100.0 32 ............................. TTTGCACTGAACATGCTGAAGGTTATTCGTAA 184239 29 100.0 32 ............................. TCGACACCCTCGATGGATTTGATAGAGTCGAG 184178 29 100.0 32 ............................. ACGTGTTCGCGATAACGGACAACGGGACGCCT 184117 29 100.0 32 ............................. GTGTGGCTTTACCTGGATTGCATATGAAAACC 184056 29 100.0 33 ............................. GAAATCCAGCCCGACGGCACGGGGTTGTCAGTT 183994 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 183933 29 100.0 32 ............................. ACACCAGCTACCGGCGACGCCTGCAGGCTGCA 183872 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 183811 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 183750 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 183689 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 183628 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 183567 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 183506 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 183445 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 183384 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 183323 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 183262 29 100.0 33 ............................. GGCTTCAGCACTGGCAGTAACTGAGGCTAATAA 183200 29 100.0 32 ............................. TCTCCGAAAACTGTGGGTGCATATACCGACAT 183139 29 96.6 32 .........................G... TTGATATAGCAAATTTTTTAACTATTGCGTGG 183078 29 100.0 32 ............................. TTGATATAGCAAATTTTTTAACTATTGCGTGG 183017 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 182956 29 100.0 32 ............................. TTCGTGTTGGCCTTATTCGGCAATTGCTGGGG 182895 29 100.0 32 ............................. AGGGTCTGGTTACTTCATTACACGCAGGAAAC 182834 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 182773 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //