Array 1 580429-574440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076448.1 Elioraea sp. MS-P2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 580428 36 100.0 38 .................................... GGCCCGTCATCCTCGACGAGACCGAGCCCAGCGAGGAG 580354 36 100.0 39 .................................... GAGGTCTCGCTCGAGACTGCCGGCTCCCTGCGCCGTGGG 580279 36 94.4 38 .........................TA......... ACCATCCCCGACGGTTTGAATCATGCCTCATCCAATCG 580205 36 100.0 38 .................................... CAGAAGCCGCGCTGCAGGACTTGGCGGACGTGGTGCGA 580131 36 100.0 38 .................................... TAGCTCCTCTAGCCGAGACACGGTTTCGGATCGGACGG 580057 36 100.0 37 .................................... ATCGATGCTGGGCGCGTGGTCAACGTCATCGAGGCCC 579984 36 100.0 38 .................................... GCACTGCATTGGGCGACATGTCGAGCTCTTCGGTGATG 579910 36 100.0 39 .................................... GATAGCAGTCTGGCGCACCGCGTCGATGGCGTCAGCAGG 579835 36 97.2 36 ..................................T. AATGAATCGGTTTATAGCGCAACGTCTTATAGGAAG 579763 36 100.0 37 .................................... CGTGCCGGACGTTGCCTCTGCCGAATCTTTTGGCGTC 579690 36 100.0 37 .................................... CGCCAAGGAAAACGCCGAGATGATGTTCCCGACCATC 579617 36 100.0 37 .................................... GCATAGTTTTTCGTTGGGTTTTCGCATTTGGGCGCGT 579544 36 100.0 41 .................................... CCCAATCAGCCGCCGGAGCCGCGCAGCCCCCAAGCAGTGCT 579467 36 100.0 39 .................................... CCGCAGGGCTTGATGCACAGAAAGACCCGGCGGGCAAGT 579392 36 100.0 38 .................................... CACTGTAGTGGGCGCGCGTGTGGTAACGCGCTACGCAT 579318 36 100.0 40 .................................... GTCACAGTGGTGGTCGTCGCTGCTGCAACGCGACCACCGT 579242 36 100.0 38 .................................... ACCACCATACGACGAACCGCCACCGTGGGTTTATGCAT 579168 36 100.0 38 .................................... CGACAAGACCGCGCCTGGCACGTCTCGTCCTGTCCTCT 579094 36 100.0 40 .................................... AAGCGCCCCCGCCACCAACCCAAACCGCCCGCCATGCAGT 579018 36 100.0 39 .................................... CCTGGGGTTGTATGGCTCTTCGTGCTTTGCGGCCTGGGT 578943 36 100.0 43 .................................... GTCACCCTCCCAGTTGCCACCGACCGATACAGTGATGTCTCTT 578864 36 100.0 39 .................................... GGCCGTCGGTGTAAGTAATGCCGTTCGGGTAGGCGCGCA 578789 36 100.0 39 .................................... CAAGTTGAAGATTCTCGCGCCACTAGCACTGATCACAAA 578714 36 100.0 40 .................................... TGCCTGGGGAGTCGAGGGCAGCGAAGGGCCGCCGATCTGA 578638 36 100.0 40 .................................... TGCGATGGCGACATGACGCAGGCTATTCAAGCTTGGCGTA 578562 36 100.0 40 .................................... TGCGATGGCGACATGACGCAGGCTATTCAAGCTTGGCGTA 578486 36 100.0 38 .................................... CGCGCGCCAAGCCCGGGCCGCTCATAGCGGCCACGCGA 578412 36 100.0 37 .................................... CCGAGCGGGCGGCGGCAATAAACTGGGCAACGGAGTA 578339 36 100.0 39 .................................... GACGGTGGGCACACGCCCGCGTAACACGAGTAGGAGCCA 578264 36 100.0 38 .................................... AGTGGATGAGGCAATCGAAACCGTGGCCGACGATGCCA 578190 36 100.0 39 .................................... GTGCGGCGCTTGAATGCCAGCGGCCGCAACCGGTTGGGA 578115 36 100.0 39 .................................... CCGCGACACGGAAAGGCGGCTTGTTGCGGTGCGTAATCA 578040 36 100.0 39 .................................... AATGCGCACCTAGAGCCCGATATCTGGCGCATCGAGCGA 577965 36 94.4 39 ..............AA.................... GATGGTCGGCGTCGTAACGATACCACCTCGCGCGAATGA 577890 36 100.0 39 .................................... ACGTTTTGAGCGGTTGCGGTGGGAGCGTGGTTCGCCTGA 577815 36 100.0 39 .................................... TGCCGCATTCCCACCGTAACGCCGCGAGCGTACGGCGCA 577740 36 100.0 39 .................................... GAATGTAGAACTCAGCATCCGGGGGCAGGACGAACCGAA 577665 36 100.0 37 .................................... CCAAGCGGTATTCGTGCGTGCGGCCAACCTGTTCGAA 577592 36 100.0 40 .................................... TACGATTCCGGCAACGCGGCAAACCGGGTCTTTATGTTCA 577516 36 100.0 39 .................................... GGAACGCGCGGCGCTTGCCCTTTCCAGCTGTTTGTGGAA 577441 36 100.0 40 .................................... CACTGTTTGCGCTCACTTCGACTTCAGAAGGTTTATTCCA 577365 36 100.0 44 .................................... ATCGTGGAAGAATGGGCGGCAAAAGCCGCCGCGCGCGCTGCGAA 577285 36 100.0 38 .................................... TCCGGAACCTCGATCCGGCAGCTGAGGATTATCAGCAA 577211 36 100.0 40 .................................... CAGGCAGCGAGTGAGCTGCCAGTGACTGGCGAACACTGTA 577135 36 100.0 38 .................................... ATGGTGACGCCACTATGCAGAAATCCTGCGCGCACCGA 577061 36 100.0 37 .................................... GCCGGCATCACCGTGCTGTCCACCCTGCGCAGCCAGA 576988 36 100.0 37 .................................... GTGTGGGACGCTGGCGGTGGCGGCGGTGGAGAAAACA 576915 36 100.0 37 .................................... AACTGGCCGTCGCGTGTTTCTGGGGTGATTGCCGCCA 576842 36 100.0 37 .................................... AGGAGAGTGAGGCCACCAAGAGGAGAAGGGCACGATA 576769 36 100.0 39 .................................... GGCGAATGTTACGCTTTACCGCGCAAATGGATTTCTTGA 576694 36 100.0 37 .................................... GAAGGTTGAGGCGCAACGTCTTGCGATCGAAAAAAAA 576621 36 100.0 38 .................................... GGAACTGAACCAGCTCCACCCCCGTTTGGGCTGCTTCA 576547 36 100.0 41 .................................... GAGGCTGACGCTTTCTGGTGTGGCGGCGCTGCTTTCGCCGA 576470 36 100.0 38 .................................... TGATCGGCATGGCTGCGATACAGTCACAAAAATCATAA 576396 36 100.0 36 .................................... ACAGCACTCGCCGACTTTGCTGCATCGCCGTGCCAA 576324 36 100.0 36 .................................... GTCCGACGAGCGACGTTGTTAGTGTTGCCCATGCGA 576252 36 100.0 36 .................................... GAATGCAGGCATCTGCGGATATCCGCCGCTTGACGA 576180 36 100.0 40 .................................... ACGCCTGCCGCGCCCAAACCTGCCCCCAGCAAAGTGCCAA 576104 36 100.0 39 .................................... GCCTGCCCCGTTGTTGGCGACAGCAGCGTGACAACCAAA 576029 36 100.0 40 .................................... GGCCATCGTTCGTCGGCTCGGACCAACAGTCCGCCGAGCA 575953 36 100.0 39 .................................... CCCGCAAGAGGGGTAGATGCAGATTTTTTTTCGCCATCA 575878 36 100.0 38 .................................... GATGAACACGCGCTGTGTCGCTTGGCCCGGAGGCGTCA 575804 36 100.0 37 .................................... GGGACGCAAACGCGCGCCATTTCGCTAGCGTCAGGCA 575731 36 100.0 37 .................................... TATGATGCGACGCAAGACCCCGATTCTGTTCGCGAAA 575658 36 100.0 38 .................................... GCATGTTCCGCCCGCGCATGAGATGATTGATCCGCTGA 575584 36 100.0 40 .................................... CCGCGCGGTTGCCAATAGTGGTCACCTACCTTGCTCCGGA 575508 36 100.0 36 .................................... TCATTGGTCGCGAAGGAATGCGCGAAGCAGGAAATA 575436 36 100.0 38 .................................... CCTTTGGTTGGCGCGATGCGCGGATCGCGCAGACGACA 575362 36 97.2 37 ................C................... TTAGTCGAGGGCGCGATCAGCGGCGGATCGTTTCAAA 575289 36 100.0 36 .................................... GCGCGATTTCTTCCAGGTGCCGACGCACTTCGGCGA 575217 36 100.0 38 .................................... GCGTTCGAGCGATATCGCTCGACCGCGTAACAGACATA 575143 36 100.0 39 .................................... TTGCTGGCGGATTGGTGGCCGTCGCCACTGGTCGACGCA 575068 36 100.0 36 .................................... ATGCGTTCCTTCGCTTCGGTTTCGCGCCACCGGAGA 574996 36 100.0 38 .................................... GTGGAAGCGTTGGGCGGAGAGCGCCGCGTGCGACGCAA 574922 36 100.0 39 .................................... ATTTGATCGTTCCTTTGCTTGCGCTTCGTGCATGCCGGA 574847 36 100.0 38 .................................... CTTGTGGTTATCCACTACCTGCTTAGCACCAGTTGTCC 574773 36 100.0 38 .................................... GCTTGTTGCGGCTGTCGCATGCGTGCGCAACGGTTATC 574699 36 100.0 38 .................................... GTGTGGGGAGCGGCCGAGCTTAGTACTGGCTTTACAGC 574625 36 100.0 40 .................................... CGCGTGGGCGCTGTGCTCGCATCGGCTGGGTTGGTGGTGC 574549 36 100.0 38 .................................... AACCGTAGACGTAGACGGGCGACGCTGCAGGTTCCGAC 574475 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 81 36 99.8 38 CTTCAATGAGGCCCCGGCACGAATGCCGGGGAAGAG # Left flank : CCACCGCGGCGAACTTCGTCAGGCGGCGGAGGATTTTCGCGCGGCCCTCCGGCTCGGCCAGCAGCACGTTCGCGGGGACCTTGCTCGTATCGAAGCCGAGCTGCGCGCAGAGACCGAGCTGCGCGGCAGCGCCGCGCCACGGTGAGGGCCGCGGAGACCGGGGCATTGCTGCCAAGCGGAGTCCCTGGGTGAGATCAGTCTATTTGCCGGGGGGCAGGATGGGGTTCGTGTGCTGTCTAGGGCAAAAGAATAGGCGATGTGTGTTGGCTACGCGAGGCGGAGTTTCCGCTTACCCGTGTGGACGACCGGCGTGTGATCAGCGGGATCGTGCACGTGCTGCGCTCTGTCTGCCCCTGGAGGCAGGCGCCGCGCGATTACGGTCTCCTGGAGACGCTGTAAAACCGCCCCGTCTGCTGGGCGATCGAGCATCTCCCACTTCAGCTCTCCGGAATTTACGATTTCTGGCGCTATGGTCGTGCACCGCCACGTCCCAAGGAAAG # Right flank : GCCGCCGCCACCTTTGCAAACCACGCCAACGGGTTCCAGACCAGCCCGCGAGCGCTCCCAACCTCCAGCCCATCCCCACCAAACAGCGAGCATACATAGTCACCCGAACACAAAATAACCCTCTGATCCAGCATGTCAAAGAACTCCGCGAGTACTGCCGCGACCCAAGGCGCCACCCGAGCGCTCGCAGCGCCTCGGCGCACTGATGATCAGCACCCCTTGGCCCACCTCACACGATGATCGGTGCCCGGGCAACCGGAACGAACGCCTTGCCAAGGCTCACCACCCGCGGCTTCACATCGTCGGCAGGCCCAAGGTCTAGGATCAGCACATGATCCTCGTCGTGCCTGATCACAGCGCTCACCGCCGCCTTCAGCTCGACAAGCCCGCGCCGTGACAGCCGCGCCTGGAACACCGAAAGCTGAAGCCACTCGCCGCGACCGTTCATCACCCGAAAGAGCCGGCGCCACCGGCGCGGGTCACGCACGTCGTAGGCGATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGAGGCCCCGGCACGAATGCCGGGGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.10,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 2 1951018-1954460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076448.1 Elioraea sp. MS-P2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1951018 36 100.0 33 .................................... GCGCTAGCCCAACAAGCCGCCTGACCGCGGCGA 1951087 36 100.0 34 .................................... AGTATCTGGGGCAAACACGTTTCGCCTCCAAGGT 1951157 36 100.0 31 .................................... CTTTGTCAAAGAAGCTATCCTTAGAAACTGG 1951224 36 100.0 33 .................................... GAAGATCTGGATCAAGAGCCCGAACATCTGTCA 1951293 36 100.0 33 .................................... GCGTAGGCGGCGTCGACATATTTCTTTTTGTAT 1951362 36 100.0 35 .................................... CCAGATAACCACCACGCCATGCCCGTGCCGTGCAG 1951433 36 100.0 33 .................................... GATGAAACGGCGCATTGCTGTAGCTCCCTTGCT 1951502 36 100.0 35 .................................... GTCGGGAGCGTAGACCCGACGCCTCCAAGGCTGCC 1951573 36 100.0 35 .................................... TCCGGCCCGAGATCGGAGAGCGCCTCGAACACATC 1951644 36 100.0 33 .................................... CTTCCGCCTCAGCAGCACGTTGCATTGCGTAGG 1951713 36 100.0 32 .................................... TTAGTCAGCATCGGTGTGTTCCCTTTTGCTTC 1951781 36 100.0 33 .................................... CACGCAGGAGCACACGCTAAACACAGCCGCGCT 1951850 36 100.0 37 .................................... CGGAGTTCGGCGGGGGTCATGATTGACTCGACCTGGC 1951923 36 100.0 33 .................................... CAGCCTCGACACCATAGCTGACAGGGTCAAGGG 1951992 36 100.0 34 .................................... GTGTTCGATATTGACGAAACTTCGCCTTTGGGCG 1952062 36 100.0 33 .................................... CTGGTGCGGTAGGGCCCGTGCCAGTCGGGGGCT 1952131 36 100.0 31 .................................... GCATCGCACCGGGGGTGGGCTGTCACCACCA 1952198 36 100.0 34 .................................... CTTGATGCTTAGGACCTAAACCCCCACCGCTCGT 1952268 36 100.0 34 .................................... AAGACGAAACTCGTCAATAATCTTCACCCAATCA 1952338 36 100.0 34 .................................... CAACGGCCGCAATGTCGCGAGCGGCCGCAAGAAA 1952408 36 100.0 34 .................................... ACTACGGGTCATCTTTTGTCTCCCTTGCTACTGC 1952478 36 100.0 35 .................................... CCGCGAGACCACGGAATGCCACCACGCTTGCGGCG 1952549 36 100.0 33 .................................... CGCGACGATGCGTCCGGCCTCGTCTCGGATTGC 1952618 36 100.0 37 .................................... ACACGCATCGCGTAGGCGGCATCAACGTACCTTTTTT 1952691 36 100.0 33 .................................... AGATGCTTCCATTATGGTCAACAGTATCGAACC 1952760 36 100.0 34 .................................... ACTACGGGTCATCTTTTGTCTCCCTTGCTACTGC 1952830 36 100.0 35 .................................... CGCCGGACGTCTGGGGGTCAGTCGAAGGTGGGGGT 1952901 36 100.0 32 .................................... GAAAGCCTTGGCGTCGATCTCGCCGCCGATGC 1952969 36 100.0 31 .................................... TCACTGTCACGGACTTATACCCAGGCAAAGA 1953036 36 100.0 36 .................................... GTGGTGGCGGGGTGAGGGGGTGCGGCGCGCTCGCCA 1953108 36 100.0 32 .................................... CCTGTCAGCATCCGGTATCCCGCATCGCGGGC 1953176 36 100.0 35 .................................... CGGAAGCCTTTGCCTGGATAGACAACGAAGCGAAG 1953247 36 100.0 31 .................................... CCGCCCACGTCACGCATGTCCACATCTCCGT 1953314 36 100.0 34 .................................... ATCCACGAACCATCCGCGTTGTCGGCAACGAAGC 1953384 36 100.0 33 .................................... CCAAGGTCAAGATAGGCGAATCCTTCGCTCGCC 1953453 36 100.0 35 .................................... TACTGCCGCGCGATCCCTGTAGGCTTGAGCTTCCG 1953524 36 100.0 36 .................................... GCGAATCTCGTCCAGCACAAGCGGCAAAGGCACGGA 1953596 36 100.0 35 .................................... GGCCGCGCGTCACGGCCCTCCCCCGCCACAGCGGC 1953667 36 100.0 35 .................................... CCACTGAAGCTCGATAACGTGGACAGCGTTCTCAA 1953738 36 100.0 33 .................................... CTCACGCTCGGCGCGCAGCTCCCAAGCCGCTGC 1953807 36 100.0 34 .................................... ACCGGAGTCCATATTTATCCTCCACCGTTTCCGC 1953877 36 100.0 33 .................................... AACAGTCGGCCGACCTGACGACCCGGACGGCCT 1953946 36 100.0 33 .................................... AGCTTGGCCTTCTGCATTTCCTCGGTAGTCAGC 1954015 36 100.0 33 .................................... TCTTGCGCCAACTTCGCTACCTTGACTTCCTCG 1954084 36 100.0 32 .................................... AAAGAGCCGGTCGCTTTTGTCAGCGACCTTCT 1954152 36 100.0 33 .................................... GCCGAACGCATCCGGATTAAGCGCCGCGGCTAC 1954221 36 97.2 31 ................................T... GGCGGAAGCGGGTCAATCGACCCGCTTCCAA 1954288 36 100.0 33 .................................... CATCACGAGTAAACATCTCGATTCTCCCTTTGC 1954357 36 100.0 33 .................................... GGGGGGAGGGACCATCGAGTCCCTCCCCCGAAG 1954426 35 86.1 0 ....T...C...........C....C...-...... | ========== ====== ====== ====== ==================================== ===================================== ================== 50 36 99.7 34 CTTCCAAAGCAGACCCGATCTTCAGGGGGTCAAAAC # Left flank : AGCTGCTTGCGCGGCTCGCGGCGGTGCTTGCCGAGACACTCTATTCGGAGTGAGGGGGCGCGATGCCGGTGAATGCGCGCCGGGCCTGGATCATCGGCTATGACATCACCTCGCCGAAGCGTCTTCGGCGTGTGGCGCGGTTTCTTGAGCGTCGTGCGCTGCGGGTTCAGTTTTCCTTGTTTCTTGGGTTATGGACGGAGGCGGAGTTTGAGGAGGTGTGGTTGGGCCTGTCCTGTTTGATCAATCCGCGGCGTGATGACGTTCGCGCCTGGCCTGTGCCTGAGGCGGCCGAGGTGGTGTCGATCGGGTGTGGGTTGCCGGAGGGGATTGTGGTTGGGGAGGCGCGGTCGCGCGGGTTTGCGCGTGTGGGCGGTGCCCTTCGTTCGGGCGGTGGTGGGGTTGGTGTGTGAGCGGTTTGGAGGACAGGTTTGCGCGCCCGCCTCGGATGTGCGAAGCTTGTGTGGAGCTCATTGACATCGTTGGGTTTTTCGAGGGGGAGC # Right flank : CACGCACGCGATCAGCAGCACCAGCCGCGCAAAGCCCAACCGAGACCAAAGCCCCACACGTCACACCCCGTCCCCGATCACGCAGCAACGCACGGCGCCAGGCCCCACCGCGAGCCCAAGCGTCTCGGCGTCAAAACCCAAGACGGCCGAAAAGTGACAGCCAACCAGGGCCGCGCCTCCACGCGCGCGAGCCCCGCCCGAGCGCCCGTCACATGCCCCAGCGCACGGCAACAACTCGCCGCGACGACGATCGCTCTTCCGACCGGAGAAGGTGACGAGCCGAAACGACCGGCACCGCGCACGGCGCCGCCGCAACCGCCCGGCCTGCCCATTAGCCCAAGGCGGTGCGTGGTGGAGCTGAGGGGAATCGAACCCCTGACCTCGTCATTGCGAACGACGCGCTCTCCCAACTGAGCTACAGCCCCACGTCAACCCTGCGTTCGCAACCCCGCTCTTATCAGCGCCGCCTGAGCCGAAGTCAACACGCCCCCGCCCCCATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAAAGCAGACCCGATCTTCAGGGGGTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 1994988-1992147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076448.1 Elioraea sp. MS-P2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1994987 36 100.0 35 .................................... GCGCTCGAGAGCCGAGATGTGAAACCCGCGGCTCT 1994916 36 100.0 36 .................................... TCGGGCAGGCCCGTGACCTGCCCAAATGCGCGCGCC 1994844 36 100.0 32 .................................... TGCTTTTGTTTCGCTTTCGCGCCGATCGCGTG 1994776 36 100.0 36 .................................... CTCGGCCTCGGCATCACATGCCTCAGACCGTGCGAG 1994704 36 100.0 34 .................................... CCAACGGGGCATCGATGCATCATCTCAAGGCTCT 1994634 36 100.0 33 .................................... CCGCCAAGAGTGCGGCGCGCTTGAAACGGTAGT 1994565 36 100.0 35 .................................... ATCGGATTCCCTTCACAATCTTGAAGCGCGTAGGG 1994494 36 100.0 35 .................................... CTACTGCCCCGCGCCCCATGCGCCGGGCTTCGTGA 1994423 36 100.0 31 .................................... CCAGTCGCCGCACAAGCATTTCCTGCGCTTC 1994356 36 100.0 35 .................................... GTAACCTCCCCAAACTGGCGCGCCACCACGGGAAC 1994285 36 100.0 33 .................................... GCTGCCCCCGGCGCACGCACCATCTCTTCCAGC 1994216 36 100.0 31 .................................... GAACCGTGGTGTTGCCGACTCCCACCACGGA 1994149 36 100.0 35 .................................... GTTGCATGGGTGCATCATGCGCCATTCGGCGCTTC 1994078 36 100.0 36 .................................... GCGGAAGGTCTGGGTCAAGAGCCCGAATATCTGCAT 1994006 36 100.0 36 .................................... GTGCGGAGTGAGATTCAGCATCCGAACCCCTTCAAT 1993934 36 100.0 33 .................................... GCCTCAAAGACAAGGCTTGACACGAGGCAAGCC 1993865 36 100.0 34 .................................... GATGCTGATGCAGCATGTGCTGCTTCGGCTTGCC 1993795 36 100.0 34 .................................... CAGCCGCAGGCGCGCAGCTCGGCCGACGGCTGCC 1993725 36 100.0 35 .................................... TCTACAAGGTGGCGGATGCGCATTCAGGCCTCCGT 1993654 36 100.0 33 .................................... TCACACGATCGAGAGTCATCGCCAGCACATCCG 1993585 36 100.0 35 .................................... ATCATCTTACGCATCGTCTTGTTCCCTTTCGTTCC 1993514 36 100.0 35 .................................... AGGCGAACCGATTCAAAAGAACGTCGGCTTCGCCC 1993443 36 100.0 35 .................................... ATGATGCGGCCGACTTTCGACGCCACACGCATCGC 1993372 36 100.0 33 .................................... CTGATCAACGGTTTGAAAAGCCATGATGCGGCC 1993303 36 100.0 33 .................................... CGGCGTGACGCAATCAGCCTAGAGCCGCTCCTG 1993234 36 100.0 35 .................................... CCTGGGCATCACATTCATCAGCCCGGCCGATGTGG 1993163 36 100.0 34 .................................... CGACGTATTGTTTGTTGTGGGCTGCCTCCTTCGC 1993093 36 100.0 36 .................................... ACATGCTCGCCACTACCCTTCGCCTTTCGGCCAGGA 1993021 36 97.2 35 .................T.................. TGAGAAACCTATACCCACGACGGCAATACTTAGCG 1992950 36 100.0 33 .................................... TCGAGATTATCGTTCATGACCCCTCCTTCATCT 1992881 36 100.0 34 .................................... AGATCGGGTGAATCGGGTTCCCCTCGCGCCCCAG 1992811 36 100.0 31 .................................... AGTCTCGCCAGGAGGCGCGTCAGTCTCATAG 1992744 36 100.0 35 .................................... TCGCGTAGGGCGTAAGCTCCGCGACCGCCGCATCG 1992673 36 100.0 34 .................................... GCCTCCTTGTTGGCGGTTGCGATGAGCGCAGTAA 1992603 36 97.2 32 .....................G.............. TATCTGGGAAGCCAAACTGATCAAGCGTATCG 1992535 36 100.0 35 .................................... AACTCCGCCGCGTCTTCTTCGCAATATTCTGCATC 1992464 36 100.0 36 .................................... ACAACCGTCTCCGTGGTGGCCACACGTGCCACCATC 1992392 36 100.0 34 .................................... GCGATGCCGGGCGACCCACGCCTCGATCGCAACC 1992322 36 100.0 36 .................................... TCAGTGCCGGCAGCAAGCGCGGCGTTGTAGGCCCGC 1992250 36 100.0 32 .................................... CGGCACGGCGCGCTGATCGAGCAGCCGCTTGG 1992182 36 91.7 0 ............................C..G..T. | ========== ====== ====== ====== ==================================== ==================================== ================== 41 36 99.7 34 CTTCCAAAGCAGACCCGATCTTCAGGGGGTCAAAAC # Left flank : CCGGCACTCCGCGCGCACCCGTCAGGTCCTGACGCGAGGGCGTGCGAGATATGCCGTAGCGGCGCGCGACACCGCCGCAGCATTGCCTGTCGGCCGCCGGTGCTCGGTGCTCGCGGATGCGTCTTCGGCGTGTGGCGCGGTTTCTTGAGCGTCGTGCGCTGCGGGTTCAGTTTTCCTTGTTTCTTGGGTTATGGACGGAGGCGGAGTTTGAGGAGGTGTGGTTTGGCCTGTCCTGTTTGATCAATCCGCGGCGTGATGACGTTCGCGCCTGGCCTGTGCCTGAGGCGGCCGAGGTGGTGTCGATCGGGTGTGGGTTGCCGGAGGGGATTGTGGTTGGGGAGGCGCGGTCGCGCGGGTTTGCGCGTGTGGGCGGTGCCCTTCGTTCGGGCGGTGGTGGGGTTGGTGTGTGAGAGGTTTGGAGGACAGGTTTGCGCGCCCGCCTCGGATGTGCGAAGATTGTGTGGAGCTCATTGACATCGTTGGGTTTTTCGAGGGGGAGC # Right flank : GCGAAGGCCCAAGGGCCACGAGTGGCGGCCCTATCGACGCAAAGCCGATCGTCAACGAGTGACGAGCACACCACGCAAGGCGCGACCACACCTCGGGCCGCGCTCCACGCGCCTCAGGCGCCCGGGAACCCGCCCACACTCGCAACGAAACCGTCTCTCTGACGGGAGAACCAGCCCAATGCCGCCTTGAACCTCACGGGCGGACGCACTCGCCAAACGCGAAGAGGGGCCGCTGTGGGGCCACCCTCAGGCCCGGCTCACACCCGATCCCGACTGGTGGAGCCGAGGGGAATCGAACCCCTGACCTCGTGAATGCCATTCACGCGCTCTCCCAACTGAGCTACGGCCCCAACCGTCGCGCACGGGCGCCAGGCGCGCCCGCTGTCGGGAACGCGGCCTTCTAGCGAAGCCCTGCCCCCCGGGCAAGGGCCCTTGCCGCTTGCCTCGCCCGGGGCGGAAGAGGACATTCCAGCCCGCTCAAGAGGCGAGGGAGGAACGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAAAGCAGACCCGATCTTCAGGGGGTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 4 2339692-2340119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076448.1 Elioraea sp. MS-P2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2339692 36 100.0 29 .................................... AGACTGGCGAGCTACATCTCAAACTGCGA 2339757 36 100.0 30 .................................... CACTCAGGCGCCCCGGCCTCCGCGCCGTGT 2339823 36 100.0 29 .................................... GGCGACATCATTGCTGTAGCGAACCAGTG 2339888 36 97.2 29 ....C............................... ACCATGCCGGCTGTCGTCGCCGCAATTGC 2339953 36 100.0 30 .................................... TGAATGCAGGCATTTGCGGATATCCGCCGC 2340019 36 100.0 29 .................................... GCCTCGCCTCACCGTGCCTTGCCTGTCCG 2340084 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 AGTTTAGCCGATGGGGGAATGCGGGCCAACCGCAAC # Left flank : GATGCGGTGCGCGGCGAGCCTTGCCGAGAGCTACCTCTCGGGCGTTCCGGCGCTCGAGTTTCCGATGCTTTCCGCGGAGGGCGGCAATGTCATTGCGGAACCGGACTTTCCTGTCGGGCTATCGGGTCATGTGGATGTTCGTGATGTTCGATCTTCCGGTGACGACGAAGTCTGAGCGCCGGGCGGCGGCGAAGTTCCGGCTTTGGCTTTTGGATCAGGGGTGGGAGATGAGCCAGTTCAGCGTGTATTTGCGCTGGTGTGCGAGCAAGGAGCAGGCCGAGCGGTGGCTGAGGGAGATTTCGCGCAACCTTCCTGGCACGGGGAAGGTGCATGTGCTGATGGTGACGGACCGGCAGTTCGAGCAGATGACGGTGTTTCGGGGCCGGTCGCGTGCCGGGAAGCGGCCGAAGCCTGAGCAGCTGACGTTGTTCTGAGCGGTGTTTTGGGGCGGCTCCATCCTCCGCTTGTCCGTTTTGGATCAACGGGTTGGCGGAGGATGG # Right flank : CCGACGACCGATGCGGCCGTTGCTCAAAACGCCTTACGCATCCCGATGCCGCCGCCCGGCTCAGGCGTACATCTCCTCCACGAGAGACCGATACGCCGCTAGAACCTTCTGCCGGCGCACCTTCTGCGTCGTCGTCAACAACCCGTTCTCGATCGTGAACCCGGGCACGGCACGCCAGCGCCGGATCCGCTCCGCAACCGTCAGCGACCGGTTGGCGTCCTCGACCGCCCGCGCAAGCTCCGCCTCGTCCGCCCCCTCGGCGGGGACCAAGAGGGCCACGAGATGCGCCCGACCGTCGCCTGCCACCACCGCCTGCTGGATCGCCGGCTGGCGCGCGAGGATCCCCTCCACGCGCGCGGGGCTGATCATCTCGCCACCGGTCGTCTTGATGATCTCGCGCTTGCGATCGGTGATGCGCAGGTAGCCATCGTCGTCGAGCGCGCCGACATCGCCCGTGTGCAGCCAGCCGTCGCGGATCGCCTCCGCCGTCGCCTCCGGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCCGATGGGGGAATGCGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //