Array 1 64-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJRV01000061.1 Streptobacillus notomytis strain AHL 370-1 B-10-16_S9CLC_contig_157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================== ================== 64 37 97.3 29 .....A............................... TTTCAGTTTTTGATGAATAGTAGGCACTT 130 37 97.3 31 ...........A......................... GTTAGTAGATGAACAAATAGAAGATGAAATG 198 37 100.0 29 ..................................... TTGAAAGATACCAAATAGATTATGGAATA 264 37 100.0 29 ..................................... TTAAATTTTCTCATATTATTATAGTGTTA 330 37 81.1 0 T.C........A......T..AAT............. | ========== ====== ====== ====== ===================================== =============================== ================== 5 37 95.1 30 GGATACAGATTCTTGGTAAATTTGAATAATGTGATAC # Left flank : TACAGATTCTTGGTAAATTTTAATACTGTAACACCAAATGTATAAGGTACAGTAGATGAAAATG # Right flank : TAAATAATGATAA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATACAGATTCTTGGTAAATTTGAATAATGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 94665-93324 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJRV01000216.1 Streptobacillus notomytis strain AHL 370-1 B-10-16_S9CLC_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 94664 36 100.0 30 .................................... ATTTATTGAAATCAGCATTTAACTTTCTTG 94598 36 100.0 30 .................................... ATAGCCTTTTCCTATTATTTCAGGCAAATA 94532 36 100.0 30 .................................... TCATCCTCAAATGTATAATCTAGTATTTCA 94466 36 100.0 30 .................................... TCATCCTCAAATGTATAATCTAGTATTTCA 94400 36 100.0 30 .................................... TTGATGGAAGTACTATAACTGGTGGAAGTA 94334 36 100.0 30 .................................... CTTCTAAGACAATGTCTTTATCATTTTTTA 94268 36 100.0 30 .................................... ATAACACTATAGTACTATGTGACAATTTAG 94202 36 100.0 30 .................................... CAATTCCATATTCTATTTGGTATCTACCAA 94136 36 100.0 30 .................................... CCACTTTCTCCTATTTCTCCATAAATGAAC 94070 36 100.0 30 .................................... CATTTTCATATACTGTGCCTTTTTTTCTTC 94004 36 100.0 30 .................................... CACCTGCATTACCTTGTAAAAACAGTCCTA 93938 36 100.0 30 .................................... CAACCCACTTTACCACAGGAGAAAGAACAA 93872 36 100.0 30 .................................... CATTTTCATATACTGTGCCTTTTTTTCTTC 93806 36 100.0 30 .................................... CACCTGCATTACCTTGTAAAAACAGTCCTA 93740 36 100.0 30 .................................... CTCTAGCACATTCGTTGATATCTTCTATAA 93674 36 100.0 30 .................................... CTCTAGCACATTCGTTGATATCTTCTATAA 93608 36 100.0 30 .................................... TATTGTCGAAGTGTGTTTATTCCGGTATTA 93542 36 100.0 30 .................................... ACTTATTGACACTTCCGCTATCTTCATTTC 93476 36 100.0 30 .................................... CTCAAAAATTATATTATGTTTTTCTAATTG 93410 36 88.9 16 ......T......T.......T...A.......... TATCCTCAAATACATT Deletion [93359] 93358 35 80.6 0 .................C..TT...A...AA-.... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.5 29 GTATCACATTATTCAAATTTACCAAGAATCTGTATC # Left flank : AATTGTTTTTCGACCATTTTATATAAAGTTCTGATTGAATTATAATAATTATTTTCAATTCCCAATTTAATTATCACATTAAAATCACTACCTCTTATTTTTCTTAATACATATCATATTTTCATTTTTATAATCTTTTAAAATAAATTTAGATTTAGAAATTATATTTTCAAAATTATCCAACAATTAATTTTTTATTTATGAATGTCTTTATTATATATTATTCAAAAGGAACAACTTAGTTAGTTTGTAACTTTCCAAATTCTTTTTCAATAATTTTAATTATATTATCATTTAATGTCATTCATTTAACTATTTTAAGTGATTTTTTAATGGTTTTATTCTCATATTCTCTATACTTTTTGTCTTTTGAAAACATACTCTCTCCTATTTCTACATCTCTTTCAACTTTAGTTGCTTGATTATCTCTATATATTTCTACTATATATTCAATCTTAATACTAGATAACATCTTTTCTTTTAAAATTATAATTTATATT # Right flank : TATACATTAAAAAACAATTAATGGATTTTTTGAAATTTTGACTTCAGATAATTTAGGTTCTTTTACTAATACTAACATATTTTCATACTGTCTGTTAGTAATTTTCAATATTCTTATCTCACCGCCAACTAATCTATTGCTTAATTTTTTTACTCTACTAAAATATTTAGAACATTCAGCATCATTTCTACAAAATCTTGAATAACAAGAATATTGCATCATAATAAAACCTTCCGATAATAAATTTTTTCTAAAATCATGAGCCTGTTTTCTCTCTACTTTTGTTGATACTGGCAAATCAAAGTAAATTAACAATCTCATTTCTTTATAGCTCTTTAAAGAGGTCATAAAAATCTATCTTTATTATATCAGGTATTGCCAGTATTTTTTTACCCTTTTCTAGAAATTTCAAATAACTTTTTATTAATAATTCCATTGAATAAAGTACTGTGTATTCCTTATTATTAATCATAACATTTGCATTTAAAAGAGAAATTAAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCACATTATTCAAATTTACCAAGAATCTGTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //