Array 1 3009573-3008745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087263.1 Brevibacillus sp. MMS20-4M-10-Y chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3009572 30 100.0 37 .............................. ACCTACTTGGTGCGCGATATTCCCAATCTATCGAAAA 3009505 30 100.0 38 .............................. GTTGAAACTTCCGGGTTTCGAGAAACTGCGCGTCCTCC 3009437 30 100.0 36 .............................. AGTTGATTGAACCAATCAACCAAAGATTGCAACGTG 3009371 30 100.0 38 .............................. CTTTCTCGGCGTTCATTCGATAATATTCAGCCGATTTC 3009303 30 100.0 35 .............................. TCGGTCTTGCGCTTAGCTGTCAGTGTATCCTCCGG 3009238 30 100.0 37 .............................. TGATCAAGATAACTCGTCCTATAGTCCCAGTTGGTGG 3009171 30 100.0 37 .............................. GGCAACCGAATGAGATCGCACGCCTCCGCGCGGAAGG 3009104 30 100.0 35 .............................. ACGTTAAGTCGCCGCCATTTCCCGTCAATTGCCGC 3009039 30 100.0 36 .............................. TAATAGTACTGAGGGCACACCCGGAGTAGTGACGTG 3008973 30 100.0 35 .............................. TTGTATAGAACATTTTCCCATCCATCAAACCATAT 3008908 30 100.0 38 .............................. TCACGCAACCACAAAGGCCTGCCCCTCTGATCCGTCGC 3008840 30 100.0 35 .............................. CGTCTCCGCTGGTGTAGTCATCGATAACCTCCGGA 3008775 30 86.7 0 .T...............C.A.....A.... | A [3008768] ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.0 36 GGTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : AGCAGTTGGAAGAGATACGTAGCTTGGGCTATGCCACCAGCGTGGAAGAACGAGAACTAGGAGCAGCAGCGGTCGCGGCGCCGATTTTTAACGGATTCGGGAAGATCGTGGCTGCTCTGGCAGTATCGGGTCCATCCAACCGCTTGACGATGGAGAGAATGAAAGAAATCTCTGGACCGGTGATGGAAGCGGCTTGGAGAATGGGCAAGATGATCAAGTAGGATGGCGAGCGCAGCGGGAATGGCGGTCGTTTTGATTAGGCTGGTGTTATGATCAGTGGATATTTGGTGAGCTTGTTCTAAGAGTGGATATGTCGTCGATCCCTAGTAGCGTCGGAAACCCGGGGGATCGACGACATTTTGTGTGTTGGAGGAAAGATGAGAAAGATGAAGTATAGTGGAGGGAATCTATGGCTTTTCCATCTTTAGGTTTTCGCAGATAATGAAAAGCAGGAGTGTGACAGGGGTTGGAGAATCCTATTGTTGTCGGGGGTTTTTGGG # Right flank : CGAAGTGCCGATATAACAAATCGTAGCGGTATGAAAAGTGTTTTTGATCCTCCCCCAAGAAAGGGTTTGCTCAGAAAAAAACTCACCAAAAAAGCCCTTGGCCTTGCCTACCGGCAAAACCAAAGGGCTTTCGTCATGTGCGAACGATTGGATTCCTACCCTGGCTTTCTAGCCTGAACGCCACTCCCCAATTGTACGGTGCCCCCAACAAGGGACCGACGTCCACTCCACATAGAAGAAACGGCGGTTCCCCGCCGTTCTCCTGTCACTCTATTCCCGTCAATCAGCCTACTGCTACCGGATTCTCATCCATCAACTGACGCAGTACCGTTTGCAGGATACCGCCGTTTTTGTAGTAGTCGATTTCCACGGTGCTGTCGAGACGGACGATCACGTCGAATTCAAACGTGCTGCCGTCTTCGCGGGTTGCTTTTACTTTTGCTTTTTGGCCCGGCTGTACGTCATCGCCAAGACCGACGATGTCAAATGTTTCTTTGCCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 3250573-3250202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087263.1 Brevibacillus sp. MMS20-4M-10-Y chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3250572 30 100.0 38 .............................. TATGATATTTTTAAATTAGTCAATAGGATTTTAGATTT 3250504 30 100.0 39 .............................. TTTCTCCTCATACCGCTGGCACAATTCGCGGACGTACCT 3250435 30 100.0 39 .............................. ACTTGGAGCATCTGGAGAAGATCACCAACGCGGTCAGGC 3250366 30 100.0 35 .............................. GAAGAAGTCTTCGAGAAAAACAATGTAATATTCAA 3250301 30 100.0 39 .............................. TAGCTCGCACAAATGCGCTTGGCTGCCTCGATTGGGTCG 3250232 29 83.3 0 ....A............A....T..-...G | C,C [3250204,3250208] ========== ====== ====== ====== ============================== ======================================= ================== 6 30 97.2 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : AACGGTGAGAGCAGAAAATATAACCAGACTGAAGGCGCTCGTAGATCCTGCTGTGCATCTGGAATTGACAGGTTCACACCCTGCATTTGGTGCAGTGAAAGTGAGAGAACTGATTTCTACGTGGGTGGTTCACGATTTCACGCATATGGCTCAGATCGTGCGGGTCATGGCCGAGAGGTACAGGGTGGATGTTGGGCCTTGGAAAGAATACTTAGGGATCTTGAACAAAAAGGGATGACCGCGTGCGAGAAAGTTTGACTGCATGCACTGTTTGCGGGAGTCGATATTGACCGGAGCAGCGCTTGATCATTTTGTCGTCGACCCCCAGTAGCGTATAAAACCCGGGGGATCGACGACAAAAGGAAAAAACGAGGAAACTGCAGGTATTGTGAGATAATCGATGGGAATGGGATGTAAATCGACTTATCTTTGTTTCGTTTTTCCCTCTTGCGGGAGAATAGTGGTAAAGATAGAATGTTGATATTATGGTTATTGTTGGG # Right flank : CACAAACCCCCTCCCCGATCCAATCCATCCGCATCCCGCCCTTTCAGAAATCCCTCTCTCGAAAACCATTCCCTTCCACCCCAACGCCAGCCACCCCCGCCCGCCCCCAGGCTAGACAATTCTCCCCCTCCATTTGAGATATTTCGACTTACCCGGAAAATCCCTCCACTTTTATAATGAACACAAATGAAACCGATTCCATTAGAAAGAGGGGGACTAGATGAAAAAGACCAGTAGATTGTTTCGTCTCCTGCTGATGCTGCTCGTCATCGCACTGGCTGCTTGTGGCGGGGCCGAGACGAATTCCCACCCGTCGGCGAGCAACGGCGGTGGTGGAGAGGCGGCAGGCGGCGGTACCAGTGACAGTGCTGCAAAAGAAGTGGTGCTCTCTTTTCGCCATACCCAGATAAAAGAAACGAGCAAGAAGCGGCTGGAAATCATGATGGACGTGCTCAAATCACTGGAGCAGAAGCATCCGGGATTGAAGTTTGAGGTAGAGG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 3254846-3252985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087263.1 Brevibacillus sp. MMS20-4M-10-Y chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3254845 30 100.0 38 .............................. AGCGCTTCAGTCCTCATCCATCATCCCTCCCTGCTGGT 3254777 30 100.0 39 .............................. ACTTTTGGCGGTATCAAAGCTATTACAATGGAGGCGAAG 3254708 30 100.0 35 .............................. AATACACGGCTATGTCGGACGACGATTTATTCCGC 3254643 30 100.0 35 .............................. ACATTGCTGGCATCATGGAGACTTTGGGCAGCATC 3254578 30 100.0 38 .............................. ACGTCATAAAAGAGTATCTCGTTTCACTAGGGATGCAG 3254510 30 100.0 39 .............................. CCTCCTGCTCGTACTAGGGTAGATGTGGAATTGGAGCTT 3254441 30 100.0 39 .............................. AGACCCCCCCTTCTGAATGGATAGGACAACAATTCTCCC 3254372 30 100.0 40 .............................. TCCGTTAACAACCCGATCTGCTGATAGAGCAGTTTCGCAG 3254302 30 100.0 36 .............................. AATAGATAGCCAGCGTTAACTTTGGTAGAATATACT 3254236 30 100.0 39 .............................. CTTTCCACTATTCGTGTGAATAGAGTGTTCAGCACCTCG 3254167 30 100.0 40 .............................. TAGGTATCCCGGAAAGGCAGAACTTAGGTTGTACAGCCGA 3254097 30 100.0 35 .............................. TGCTACTACGCTGCAAACAGCGCACTCAGATAGAT 3254032 30 100.0 39 .............................. TCATCGGAATATGTTCAGCACTCCACGTAGCATGAACAA 3253963 30 100.0 36 .............................. CGTTTTGCTGGGGCGCAGGCAGCAAAAGTTTTTTTT 3253897 30 100.0 35 .............................. CAGTTGGACTCTCGTTCATCGTCGTCCACTCCAAC 3253832 30 100.0 40 .............................. TGCGCGTCACGAACGACGGAAAAATGGCGATTCCACTCGA 3253762 30 100.0 39 .............................. GACGGTCCGTGACACCGCCACCGACTCCAGAGTCGTCCA 3253693 30 100.0 38 .............................. CCTCGAAAGTCCACGTATTCCCCGGCCAGTTTGTCGCG 3253625 30 100.0 38 .............................. CATCCTGCTTGTTTGTTGAGTCTCCGCACATGAGGATG 3253557 30 100.0 36 .............................. TCAAACTCCCGTTGGTACAGCGACGGATGGAACACA 3253491 30 96.7 39 ................C............. CAAACAACCGGTTGCACTGCACGCAGTGGAGTTGCTCCA 3253422 30 100.0 37 .............................. CTGAGAAAACAAGGCTGCGAGGTGCTGCTTTCCGAAA 3253355 30 100.0 38 .............................. TATTTATCTAAGATCAAAGTTGAAGGGAAGATAAAATC 3253287 30 100.0 39 .............................. TTGGTTCATCGCGTAGTTCCGGCCACTTGGCGGCTGATG 3253218 30 100.0 36 .............................. CCCTCACGTTGCGGTATGTTGGGCTGTGCCCGATGT 3253152 30 100.0 38 .............................. GACACCAAGGAAGTACGGGCAGAAGCACAGGTTCACAT 3253084 30 100.0 39 .............................. TCCACATGGAAATCCATGTATCTCGGCAGCAACCATCGG 3253015 30 93.3 0 ......T.A..................... | G [3252993] ========== ====== ====== ====== ============================== ======================================== ================== 28 30 99.6 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GCTGTTCAGAGCTTTACCGAACAGACGAAGGATACGTTTGCTTCGATGACCGATGAAGAATTGGAAAAAGAGTATGCTTCGCCGCATCCCAACCTGCATGGACCGAGGAAAAAGCTGGTCAAACTTGCCATCGATCACGAGATACATCACAAGGGACAGCTTTTCTTGTACGCTCGGATGGTTGGGGCTGAACAGCTTCCGTTTTTTATCTAAGATCGCCTTGATGACAGGGAGTCGATGGTGAGCGAGGTTGGGCTAGATCCTGGCTCGCACTTTCCCTGTCATCGGAGAATCCGGGCTTCTCTTGATTATGTAAAAGACTGCTGATAATGTTGTCGTCGACCTCCAGTAGTGTAGAAAACCCTGGGGATCGACGACAAATGCTTTTTTGGCAAAAGTGTTGTGGGAGAAGGAGGGAAGTGAAGTTTGCAGGTAGGTATGGAGTTTTTTGGTAAGATGGTGTATTTTTAAGAAAGGTTATTACGGCAGGGGTTTTTTGG # Right flank : CGAACCGGACTCTATATAAAAAAAACCTGCGATTTCACTCATTCTGTTGCCTTTCATTGAATCTCCCTACCCCATTCATGCAAAAAAACCTCCATTCAAGAAGGTTTTATCAGAAACCAATAGAAAACGTAATTAGCAGTGATATGCCTGCACACGGTGCATGTAGAAAGACTCAAATCGATGGTTTCAAATGCATATAGATGATGTATAGCTTCTCTCTCCAGAGCCATTCGCAGCAGCTAGCCAAGTCCGCGCCCACAACCAGCAACCTTTTTTACAGTTGAACAACAATAAGAAACACGGACAATACTAACATCAGCAATGCATTGATCGCCATAACCGGTTTATGTCTGGCCCTGAACAGATGCGCGTGGATCGCTCCAAGCATGAGCAGTACAAGCAGAGCCGCAGCGTATCTCAAAAGAACAGGATACCAGATCCCCGCCAATACCCCCATCATGCCCATAACCTCAAGAGCAGCGGTTAGATACATAAACCAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3606318-3604069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087263.1 Brevibacillus sp. MMS20-4M-10-Y chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3606317 30 100.0 37 .............................. TTTCTTGATCCAGTCGAATGACTGGGTTTTCTTTTTA 3606250 30 100.0 35 .............................. CCAATCGGTGGATGAAAACAAGAACGCAGCGCAGA 3606185 30 100.0 38 .............................. ACGTTTTCTTTCCACATGGCGTAACGCTTTCCAAGCAG 3606117 30 100.0 38 .............................. TTGCCACCCGATCATTTGGTCCCATGTTTTCAACCGTA 3606049 30 100.0 36 .............................. GTTTCTCGATCAGTTGGTTGATTCGATCTATTGCTC 3605983 30 100.0 37 .............................. TCCCTATCCCACAGTTCCACCTTGTATCGTTTTTTTG 3605916 30 100.0 36 .............................. TGACCAATGTCATGACCAATCCGTTGACCAATCCTA 3605850 30 100.0 39 .............................. TTCGACAAAACCTTTACAATATGTTCCCTTTTTGTTCGC 3605781 30 100.0 36 .............................. AAAACTATCGAGTATCTTAGCGCGTTGTTTGGAGTG 3605715 30 96.7 38 C............................. GCTTGCGATAACCCCTCTGAAATGAACCCCATTTCGTG 3605647 30 100.0 36 .............................. ACCTTTCCGCTTCTTCTTCCTCGCTCAGCTCTCTTG 3605581 30 100.0 36 .............................. ATTTGCGTTTCATCGTTTCAACCTCTCCCAAACCAT 3605515 30 100.0 38 .............................. CAATCTGTTCCCATCTTGCAACACGTTCGATCTCATCT 3605447 30 100.0 38 .............................. TCCATGTTGTCACTCCAGGGCGTAAAATGTACAATGGG 3605379 30 100.0 38 .............................. CACTCCTCGCAAGCCGGTTGATTATGCCTCATTTTTGT 3605311 30 100.0 35 .............................. TCCTCGACAAGCACGTACTCCAACTCCCCAAATGA 3605246 30 100.0 38 .............................. AGTTGTTCCTCCATGATTGCCAATGTGTAGTCGATCTT 3605178 30 100.0 36 .............................. CTCTATTCATCCGGCAACCCTCCCCTCATGAATCTG 3605112 30 100.0 38 .............................. TGATAATTGTTGAATGGTTTGTAGTAAGGGAGTACAAA 3605044 30 100.0 36 .............................. CCGTTGTAGTGGAAGGTGGTTCGGACCAAGACGTTG 3604978 30 100.0 37 .............................. CGGTACTATCGCGAGGTGCTCAAGGCACTATTCGCTG 3604911 30 100.0 39 .............................. TGAACTGATGCCTCCACGTACAAATAAGGCTTGCAGGGC 3604842 30 100.0 36 .............................. TTAAGGCAGCCTTTGACCTCACAAACTAGCAGCTTT 3604776 30 100.0 37 .............................. TTGGAATAAGGAAATCTCATAGGAAGTAATTAAATGA 3604709 30 100.0 38 .............................. TCCCTAATCATCAACCAAACCGTCTGAAATTCAGTAGC 3604641 30 100.0 38 .............................. CTTCTCCGGGTTGGCCAGGATTCCCAGGGCCGCTAGGA 3604573 30 100.0 38 .............................. TCGTGATTGTCATTATTGGAGCGATAGGTTCAAGAGGG 3604505 30 90.0 38 ..G.TG........................ TCGCTGCCAATGTTCTTCATTGTAACAGTCACTATGAC 3604437 30 90.0 37 ..G.TG........................ TTGGATTCACTGCGAGTATGCGCGAAAGCAGTGGGGA 3604370 30 90.0 38 ..G.TG........................ TTTCGTCGGCGATGAACCACCCGACGTCCAGCCGCGAG 3604302 30 90.0 39 ..G.TG........................ TACAAAGAACCTGCCGTCCGTGTAGTAGTTCAAGGTCCG 3604233 30 90.0 35 ..G.TG........................ AGCACATCCCATTCCGCATCATACCCGACTTCATC 3604168 30 90.0 40 ..G.TG........................ GGCAAACGATTGAAAGAAGCGAGACGGGTGCTTGCCGGTG 3604098 29 83.3 0 .....-...................T.CTT | G [3604094] ========== ====== ====== ====== ============================== ======================================== ================== 34 30 97.6 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : ATCAATCACTGTGGTGAGGGGAGGTATTAGAATTGTTTGTCATTCTCGTCTACGATTTTGCGGAAAAGCGGGTAGGTAAGGCACTAAAAATTGCGAGAAAATATTTACACTGGGTTCAAAACTCTGTATTGGAAGGGGAAATCTCCAAAGCTAATTTTGTCAAACTCAAAGCAGAATTGAAGATGTTAATGGACCCAGAGGAAGATTCAGTTATTTTCTATACATTTCGCTCCACTAAATACACTTCTCGTGAAGAATTTGGTTTGAAGAAGGGCGGAGATGAGAATATATTGTGAGTTCGTGTACGTTTTTGTCGTCGATCCCCAGTAGCGTAGAAAACCCGGGGGATCGACGACAAGAAGGGATTTGGGAGATAACAGCAGGAAATGTGCAATATTGAATGAGATGGGGATGTAATTAAAGTTTTGCTGCTAATGGTATTCTTAAGAGAGCAGTGTAGTGGAGTAGGGCAGATTATTATTTTATCGACCTTTTTTGGG # Right flank : AATCATCCTTCCCACCTATACAACCCCCCCTCCAAATGCTATCATTATCAATAACAATAACAAAAGGAGTGACCCCCCATCAAAGACCCCAAAGCCGAAATACTCCTACACCCCATCCGCCTCCGCCTCATCCAGGCGATGCAGGATGGCCGACCAATCACAGCTCGTCAACTAGCCGAACGGTTGCCTGATATACCGCAAGCCAGCCTATACCGCCACCTCAACAAGCTGTCTGAGAGCGGCATCCTGACCGTCGTCAGCGAGCAGCAGATTCGCGGTGCCACGGAAAAGACGTATGTGCTTCACTATCACAATGCCAACCTGACGGCGGAGGAATTGAAACACGCGACCCGGGAGGATCACCTACGGTACTTTATGACGTTTCTCGCTTCGCTCCAGCAGCAGTATGAGCAGTATTTGAGCCAAGACACGTTCGACCTGCAGGCAGATGGGGTAGGGTACCGACAGTTTGGCCTGTACCTGACAGACGAGGAATTCAC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3619079-3618851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087263.1 Brevibacillus sp. MMS20-4M-10-Y chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3619078 30 100.0 36 .............................. CGGCATGACGGCTAACTCGTTGGTGTCTTATATTGT 3619012 30 100.0 37 .............................. CAGGATTAAGTTGGTTGATGACAAAGGTACGTATAAC 3618945 30 100.0 35 .............................. GTAGATAATGAATTGAGAACAAATGTTCGATAAGG 3618880 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GTTTGTATCGTACCTATGAGGATTGAATAC # Left flank : GCTACTTACGGGACGGAAGAGTTGGCTGAACACGTGCTGGAAGGGATGCGGGATCGGAAAGCGGTGCTGTTGGCCAACCATGGGCTGATCGCTGGAGCGGATACGTTGGCGAGGGCGTTTTACATCGCGGAGGAAGTGGAATTTTGTGCGGAGGTGTATTATCGGAGTAAAAGTGTGGGGGAACCGGTGATTTTGCCGCGTGGGGAGATTGAGTTGGTGATGGAGAAGATGAAGGGGTATGGGGTGAATAAGGAGTAGTAGTGTTGTGGATGGTTGGTGGATGGCGGTAGCGACGTTGCTGTGGTGAGGGTAAAGCAAAAATATGGTGGTTATTGTCGTTGATCTCCAATAGGGTAGAAAACCTGGGGGATTGACGACAATCGTTTTTTCGCGATGAGCTTAGTGAGATAAGGGAAAGGTGACGTAGCAGGGAAAGTCTGGTATCGTTTTGAAACGTGGTGTATTTTTTAAGAAAGGCTATTTTTGTAGGGGATTTTGGG # Right flank : AGTAAAGGAGTTACTAGTCAAGGGGCGCCGTAGCTGCCCCAGTGCACTTTTGAGGGGCCTCGCAAGGTTATCCTTGGCTCTAGCCTCTCTTTTATTTTGTCGTGTAAGAAATCAAGGAGTTTTAGCTTGGGGATAGACCAGCTATTGGAAGCATACTGGGGCGCGGACAGAATTTGTCGACGTTGAATGCGCAAACCCCAACATTAGAAACGAAGTACTCGGAAACGCTGTCTCGTTCGAAAAAAAGCTAGGTGGTTGAAAAAAGGGTTACTATCGAAGTGGAAAGCAAGAATGAATGGGCTACCATTATTTCTCAGTTTATCGAAATGGACTGGGGCTAATCAATGCACCTTCTATAATTTCGCTCGCGAAGTTAAGGGGTATTCTGTCATAAAAGGATTTATTGTCAACTGCAAATGAAAATTCCCCATTATCTGCACTTGAATTTTCCCCATATTAGGCAATAGGTTTGTTTGAATAATGCCCCCCGAGGGGGGCTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGATTGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //