Array 1 162544-160579 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBD01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5129/18 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162543 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162482 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162421 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162360 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162299 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162238 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162177 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162115 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162054 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161993 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161932 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161871 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161810 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161749 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161688 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161627 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161566 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161505 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161444 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161383 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161322 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161260 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161157 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161096 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161035 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160974 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160913 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160852 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160791 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160730 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160669 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160608 29 96.6 0 A............................ | A [160581] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180168-178675 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBD01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5129/18 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180167 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180106 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180045 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179984 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179923 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179862 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179801 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179740 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179679 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179618 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179557 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179496 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179435 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179374 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179313 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179252 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179190 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179129 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179068 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179007 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178946 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178885 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178824 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178763 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178702 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //