Array 1 226329-224614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQA01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN024780 CFSAN024780_contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 226328 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 226267 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 226206 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 226145 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 226083 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 226022 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 225961 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 225900 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 225839 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 225778 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 225717 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 225656 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 225595 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 225534 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 225473 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 225412 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 225351 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 225293 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 225232 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 225171 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 225110 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 225049 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 224988 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 224927 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 224866 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 224765 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 224704 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 224643 29 93.1 0 A...........T................ | A [224616] ========== ====== ====== ====== ============================= ======================================================================== ================== 28 29 98.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 244227-242611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQA01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN024780 CFSAN024780_contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 244226 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 244164 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 244103 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 244042 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 243981 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 243920 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 243859 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 243798 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 243737 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 243676 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 243615 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 243554 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 243493 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 243432 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 243371 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 243310 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 243249 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 243188 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 243126 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 243065 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 243004 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 242943 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 242882 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 242821 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 242760 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 242699 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 242638 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //