Array 1 436981-436010 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIT01000128.1 Escherichia coli strain LVNMSB169 NODE_2010_length_464686_cov_49.756763, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 436980 28 96.4 32 N........................... CGGGGAATGACACGCCGTTAATAGTGGAACTT 436920 28 100.0 39 ............................ GCAAACGGAATTAGCAGCAGCATGATCAANNNNNNNNNN 436853 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 436793 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 436733 28 100.0 40 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATNNNNNNNNN 436665 28 96.4 38 N........................... AGCAAAAACCGGATATAGACAATCTCACTANNNNNNNN 436599 28 92.9 32 NN.......................... AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 436539 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 436479 28 100.0 44 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCCNNNNNNNNNNAA 436407 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 436347 28 100.0 37 ............................ AGCCAAAATAATGCGTCGCTTTCTGACNNNNNNNNNN 436282 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 436222 28 100.0 37 ............................ TGACGTCGCGTGAATATGACGCCGTTGTNNNNNNNNN 436157 28 96.4 32 N........................... CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 436097 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 436037 27 92.9 0 .......................C-... | T [436018] ========== ====== ====== ====== ============================ ============================================ ================== 16 28 98.4 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCNNNNNNNNN # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 446698-446045 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIT01000128.1 Escherichia coli strain LVNMSB169 NODE_2010_length_464686_cov_49.756763, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 446697 28 100.0 40 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGNNNNNNNNNN 446629 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 446569 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 446509 28 100.0 40 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCNNNNNNNNNN 446441 28 100.0 38 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATNNNNNNNNN 446375 28 96.4 33 N........................... CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC 446314 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 446254 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 446194 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 446134 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 446074 28 85.7 0 ....................T...C.CT | C,A [446048,446051] ========== ====== ====== ====== ============================ ======================================== ================== 11 28 98.4 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //