Array 1 163725-161133 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNO01000045.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016007 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163724 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163663 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163602 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163541 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163480 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163419 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163358 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163297 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163236 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163175 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163114 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 163053 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162992 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162931 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162870 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162809 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162748 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162687 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162626 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162565 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162504 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162443 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162382 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162321 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162260 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 162199 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162138 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162077 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162016 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161955 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161894 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161833 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161772 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161711 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161650 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161589 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161528 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161467 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161406 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161345 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161284 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161223 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161162 29 93.1 0 A...........T................ | A [161135] ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182580-180232 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNO01000045.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016007 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182579 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182518 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182457 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182396 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 182335 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 182274 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 182213 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 182152 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 182091 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 182030 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181969 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181908 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181847 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181786 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181725 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181664 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181603 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181542 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181481 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181420 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181359 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181298 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181237 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 181176 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181115 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 181054 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180992 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180931 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180870 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180809 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180748 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180686 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180625 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180564 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180503 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180442 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180381 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180320 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180259 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //