Array 1 36167-34858 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVQ01000021.1 Streptomyces anthocyanicus strain JCM 4739 sequence21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36166 28 100.0 33 ............................ CGACGGGTCGGACAGCAGGTTGGCTCCGCCGGT 36105 28 100.0 33 ............................ CGCGGCGACTGCCCTACGCGGGTCGTCGGCGGC 36044 28 100.0 33 ............................ TCAGTACACGAGTACGGAGCCGACCTACGCGGT 35983 28 100.0 33 ............................ CCGGGAGAAGGTCGCGGCTGCGATCGGCGCGGG 35922 28 96.4 33 .................A.......... GTCCAGATCAACCTGGTCAAGTTCTGGGGCCCC 35861 28 100.0 33 ............................ GGTGCAGCCCCACCCGATCAACACCCGCGCGTT 35800 28 100.0 33 ............................ CACCCGCGCGTTCTCCCCGGCCGACGTGATCGC 35739 28 100.0 33 ............................ GGCATGATTAGTGATGTCGGAAGGGAATGGCAG 35678 28 100.0 33 ............................ CAGAGTTTCCCGCACCCCTCCGACCTGCGGAAA 35617 28 100.0 33 ............................ GCGTGTGGTGTACCTGGACGGGTACGCAGGTGA 35556 28 100.0 33 ............................ TAGGAGTCGAGGGGCTCGTCGAGGTAGTCGTCG 35495 28 100.0 33 ............................ CTCGTCCTTTCCGCAGGTCCGGGCCAGCTTGGC 35434 28 100.0 33 ............................ TGCTGACGGAGCCGATGAAGGCGTCGTCGGCAG 35373 28 100.0 33 ............................ GGACACCATGGTCCTCGGCCGCAGCGACTACCA 35312 28 100.0 33 ............................ AGGCGTTGAGGATGCTCGCCTCGAAATGGGAGT 35251 28 100.0 33 ............................ CTGGGTCGGCGGGCTCGACTGGCCGAGCGCCGT 35190 28 100.0 33 ............................ CGTCCACGCCTACGCGACCGGACCGGGTGACGA 35129 28 100.0 33 ............................ CCCGAGACAGCTGCGGCAGAAGACGTGCGGCTG 35068 28 96.4 33 ........................A... CATCATCGAGATCGCCACACCGAACTACCAGAG 35007 28 96.4 33 .............T.............. GGCGTACGCCTGCGACCGCAACGGAGGCTCGTG 34946 28 96.4 33 A........................... GCGGTTGGTGAAGGTGGTGAAGGCCCCGGAGAT 34885 28 82.1 0 ............TT.........TC.A. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.5 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : CCGCCGGTAGCCGCCCCCACGTCAGTCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCACGCCTTACCGCAGTCGTGGATGCCGCACACCCACATGAACCACGCACGCCCTCGGCCACCGCTGACCTCGTCCAGCCGCCGCCGGAACGTGGCCGACACGTACTGGTCCCACATCGTCCCCGCCACGGCAGCCGTGTCCAGCAGATGCCCCAGCAGTAGATGCGTCCGCCCACCGTTGCGCGCAGCCGACTTCCCCCACAACCGCGACACCCGCGTGATGACCTCGTCGGCCAGGCCCATCGACCGCATCAACTCGACGACCGACCGCTCATCCTCCACGCCCGCCCCCTGAAGACTCGGCTGCTCGCAGCCAGTTGGTGCCGGCACTGTAAACGGAGCCACTGACAATGCCTGCCGAGGCCGAAGCGAGATGAAGGAAAACAGGTACCCTCGCTCAAATCACCGCAGCTCACGAAGT # Right flank : GTTCACTCAGTTATACGGTTCGAAGGAGCTCTGCTCCCCGCACCCGCGGGGACCGGCTGCTGCGAACCGGCAAGGTTCACAGCCGATGGCTCGAAGCATGGGCCTCCTGAAAATCACTGACTGACGCCCGACCCCGTAGGTATTCATGGCGGTATACTTTCCGACGTGGATACGACGATCAAGATCGGTGCGGAGACCCGCGACAAGCTCGCCGCTCTGGCCGAGGCCAGGAACATGTCGATGCGGGCGTTGATCGAGGAGTTCGCCGCGACCGCGCTCACTCCTGCGCAGTTGCGTGAGCGAGCCGAACGCACAGACGCGTTCTTGGCCGCAGAGTTCGGGCACCGGGTCAGCGACGATGAAGCTGGCGCATTGCGTGAGCGGATGCGGCAGGCGCAGAACGCCGGTCAGGCTCGGGTTCGGGGCACGGCGGCGTGATCGTCGAGCACTACGTCCTGGACAGTCGCACACTCCTTGCTCTGGGGGGCAACAAGCAGGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46680-47970 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVQ01000021.1 Streptomyces anthocyanicus strain JCM 4739 sequence21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46680 29 100.0 32 ............................. ACGAACGGCTGCCCGTCCTCCACCTGCACCGG 46741 29 100.0 32 ............................. TCGACTGGTCGGGGGCACCGTCGCGTCTCGAT 46802 29 100.0 32 ............................. GTGATCGTTGAGTGCCGCAGCTTCGTCTTCGC 46863 29 96.6 32 ............................G TCGACGCCGTGGCCCTTGCCGCCGCAGGTGCA 46924 29 96.6 32 ............................G CTGCGCGCCACAATCAAGGATCTCGACGCGAA 46985 29 96.6 32 ............................G CGCTGATGCCGATCATCGCCGATGTGGTCGGC 47046 29 96.6 32 ............................T TGCAGGGCGGTGTGGACGCTGGTCGGGATGAG 47107 29 96.6 32 ............................G GGGTCTCATGGCCCTCGGAGCCGGGGTTTTCC 47168 29 96.6 32 ............................A CGGCCACCTACAAGGGTGTGTCCGCTGTGAAC 47229 29 96.6 33 .C........................... GCCCGACCCGCTGCTGTCCGTGCGGATCGACGA 47291 29 100.0 32 ............................. GCCGCCTTCTCCCGGGCCCGTCGCGCCATCGG 47352 29 100.0 32 ............................. TGTCGGACCATGCGTTCGTCCTCCGCCAGCTC 47413 29 96.6 32 ............................T GGATCGCCCACACCTATGCATCACGACCAACC 47474 29 93.1 32 ...............A............A TGAGGCGCAGGGCGGTCTTGTCGTTGCCGAAC 47535 29 96.6 32 ............................G ACGTACCCGAGCAGCCCCCAGTACTGAAGGGC 47596 29 96.6 33 .................A........... TTCCGCCGCCGGGGGCTTCACCGAGCAGGAGCG 47658 29 93.1 12 ..........T.................A ATGATCCAATTC CGG [47675] Deletion [47702] 47702 29 86.2 32 ..............T.........A.A.G CGGCGGTGCGCCGCTGGCGGGAGGCGAACCCG 47763 27 89.7 32 ........--....T.............. TTCTCTGCGGCTGAGTGGAAGGCCGTACCTTG 47822 28 93.1 32 .....-......................G TTCGACCGGGGCACCGGCCGTATGCGCCGCGT 47882 29 96.6 31 ....................A........ GGAGCCGCGCGGCGCCTGGTAGTGGATGACG 47942 29 89.7 0 .........AT...T.............. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 95.8 31 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : CTGCCGGACGAGGACCTCGGTGCACTCTGGGACGACGGCGACAGCGTCGTCAGCAGCGGCCGCAACTGGAGCGCCACGCACCACTTGGACATCATCCCTGAACCCACCGACCCCACCCTTGCGGAGCCAACCCCGTGAGCGCCGGGACCACCGTTGTCGTGCTCATCGCGGCCCCATCTGGGCTCCGCGGACACCTCACCCGCTGGTTCGTCGAAGTAGCCGCCGGCGTCTTCGTCGGCGATCCCAACCCTCGCATCCGCGACCGCCTCTGGACCATCCTTGCAGAACGCATCCACGACGGCCAAGCCGTCATGATCGAACCCGCTGCCACGGAACAAGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGGCCCCCGTCGACTTCGACGGCCTGACCCTCATGGCCCGTCCCCGCCAGAACGGACAATCTTGGCGGCCTACGAACGAGGCAAAGGAAAATGGCATGATCACGTGACAACGCTGCAGGCCATGAAGT # Right flank : CCGCAGGCACGGCGAGGCCGTCACGACGACCCTGACGACACGTCGCGGCTGCCCTCTTCGGTCTGCTCCCGGAAGTCCGGCACCGGCCAGTCGAACGCCGCGTCGATGCTGGCAAACTGCGACTGGTAGTCCTTGGCGTAGAAGGGCGGGAACATGACGACCGGGGCGTCTGCCGGTACGACGTCGCGCAGGTAGTCGCGGACGTCCCCGGCGAAGAACGAGCCGAGGCGGGTCTCCACCCCTTGGAGCTTGGCGACCGTCTTGGAGTGCATCCGCTCCCACTGGAGCTCCGTCGCGACCATGACCCGCCGGTGGTAGTCGCCGTGCTTGCCGACGTAGCCGAGGAACCTGGTGTCGAGCATGATCGTGGCGAGGAGGTCGGTGCGGTCCTCGGTGTACGGCTCCAGCCACGGCACCTGCTCCAGGTACTCGAACTTCAGCCGGTAGTCCAAGTCCTGGTCCGACAGCCACCAGCCGAGGGCGCAGGAGCAGCCCTGGAT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 302-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVQ01000014.1 Streptomyces anthocyanicus strain JCM 4739 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 301 29 100.0 32 ............................. TCCGGGACTTCCGCCAGGGCCCGCATGTCGAT 240 29 100.0 32 ............................. CCTGGTGAGTGCCAGTGCAACGGCTAGAGGAA 179 29 100.0 32 ............................. GGCCCCTTCTCGCCGGAGGCGTACTCGTACCA 118 29 100.0 32 ............................. ATGGTGGTCTGCGGCCAGTGCGGCCAGATGAT 57 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGACGCCCCGCCCGCTTCGCCGCCGACGACGTCGACGCCCTGCGGATCGTCGCCACGCTGGCCGAGCACCACGGCGGACGGCTCGCGGTCACCCTGCCGCCCGGTCTCACCGGCCCCGCGCCCCGCCGGACCCCGGGACCGCAGAGGGTCGCTCCCGCTCCCAGATCCGTTGCTCCGTCGACGTCGACGGTCCGGTCCGCGGCGACTGCACGCCCGGCGCCTGTAGTCAGGGGCCTGCAGTGAGCACGGGCGGGACGGGGTCAATCACGGCGACGTCGTCCCTGCTCCGAGCGATCTGGCGTGGCGGGTTGTCAGGGTCAGGCAGGGAGCAAGGACGACCGCGTGCCGCCATGCCCAATCCCCGCTGACGTCCAGCCTTCCTGCGATTCACGTCTCCGTCACGCCGGCAGATGCGCACTGATCGATGTCCATTTTGCCGGATTCTGCAAAGCTTGCTGAAAACGCGTCTCCGCGCCCATAGAATCCCAGGTCAAACAGT # Right flank : CTGGGCCCAGCAGTAAGACCACGAGGGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17040-16221 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVQ01000014.1 Streptomyces anthocyanicus strain JCM 4739 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17039 29 93.1 32 .............T...........C... AACGTGGGGCGGGCGGGCATCTCAGGCCTTCG 16978 29 79.3 31 ...T.T.............A.G...T..T CCGGGTTCCGTACGACGTCGACCCGGTTACC 16918 29 86.2 32 ...T...T.........A.......T... CTGTTGGGCCCCGCCCCCTGGACCGATGCCAC 16857 29 93.1 32 ........................TT... GCCGTCACCCCCAACGCCGCCGAAGTCCTCGT 16796 29 96.6 32 .........................T... CTGGATCACGTGCTGATACCGCCCAGTGGTGC 16735 29 89.7 32 .....T........T..........T... GCGTCCGGCGTGGAGGACCAGGCCGCCCTCGT 16674 29 100.0 32 ............................. GCGGCGGCGACGCCACCCACGCCCAGGAGCAC 16613 29 100.0 32 ............................. CTCTTCGGCGACGAGCTCCAGCGGGCGACGGC 16552 29 96.6 32 ..........T.................. GCATGACCTGGACTGGCTCCTGAAGGGCTTCC 16491 29 100.0 32 ............................. GTCACCGACGACACCGCGGCAATCCAGGCCGC 16430 29 93.1 32 ....................A....T... ACTTCGTCCGGCGCGAACACGCCCAGCGACCG 16369 28 82.8 32 T.......T......T....-....T... GTCGAGAAGTGGCTGGCCATCCGCGACGTCTG 16309 29 86.2 32 .....T........TT.........T... ACCCAACTCGAAGTCCTCGTCGCCGTCCTGGA 16248 28 86.2 0 ...........C...........A.-.T. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 91.6 32 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : AGGCGCAGAACGCTGGTCAGACTCGCGCTCGGGGCACGGCGGCGTGATCGTCGAGCACTACGTCCTGGACAGTCGCACACTCCTTGCCCTGGGGGGCAACAAGCAGGTCTCCGGGCTCATCCACATTGCCGCGGGGGACCCCACGGTGCGCTTGTGGGTTCCCATCGTGTGTGCGCTGGAGGCCGAGCGTGAACGGGCCGGGATCGTCGACTACCTGGGCATCCTCGATGTCCTGCACACCTTGGACGCCGACTATGCGGCGGCGCACTCGGTCGCCGACCTGTATCGCCGGAACGTCCCCTTCGGCGTAGGGGCCGCCGTACACGCCACCCAGCCCACGCTGGACCGCCCCGACGGTGCCGTCGTCGCCACAGTCGCGCCCGCCGACTACGACGGGCTCGAAGCCCCGGTCCTCGACCTCAATCGGTAGGCGGTCCGCAGCACATCGGCGTCAGCCGTACGGCGGAACAATTCACCCCCTGGACTCCGCCCGCGGGCGT # Right flank : TCACAACGACCCCGTCCGTGCGGTGCGGCCGCCCCACGGATGCTCTCCGCGAAGGATCACGCGCCGCCCGCCCGCGCCGACGACGCCGCAGAGGTGATCGCGGTCGAGGGAAGAGGCACCGCAAGGTCGTACAACCGCCCCCGAATGTGCTGAACGAGCGGGGAGTCGGCGCCGTGGATGTCTGTGGCGACGGTCAGCAGGGCGGCGCCCAGGCGTTGGCGGTCCGGCCCCGGCGGCACGGCTCGCCACAGGCTGTAGGCGCGGCGGGTGGCCGCCTCGACGTCGGGGTGTCCCGGGCCCTGGATGGTGACGCGCAGCTGTGCGGAGTGCAGGTACCAGGACAGGCCGGAGGGATGGTCTCCGGCGAGGGCGGCGAGGTAGCCGCGTACTTCGCGGACCTGGATCGTGTGCAGGTGCAGTTCGCCGTACTCGGCGGTGGCGTCCCGGTCGATCCGGGCGGCGAGAGCGGCGGCGTCCGGCAGGCGTCCTGCCTGGGCGAT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 28419-28873 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVQ01000014.1 Streptomyces anthocyanicus strain JCM 4739 sequence14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28419 29 72.4 31 A...GGA.T..G..T......G....... ACCAACACCAGTCCGGCGGTGCGTACGACGA 28479 29 100.0 32 ............................. ACGGGGTGCCGCAGGCGGCCGTCCTGGATCTG 28540 29 100.0 32 ............................. GGCGCGGCGGATCTTCTCGAGGGCCTTGCGTC 28601 29 100.0 32 ............................. GCGCCGAAGGGCCGCCCGACTTCCCGGCCTGG 28662 29 96.6 32 .......G..................... GGCATCTCAGCCGCGGGCGGCTGGCTGTGGTC 28723 29 100.0 32 ............................. ACGTTTCTGACCCCCGACCTGATCGCCACGCG 28784 29 100.0 32 ............................. GCCCTCGGTTCGGTGGTGCCCAGGTACAGGGT 28845 29 79.3 0 .......T....T...TT....G..C... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCCGCGCAGCCGCGTTAAGCGCGGTCGCCCGCCATTTCACCCGCTTCCCGGCCCGACCCCAGCCAGGCATCGACCCCATCCGCACCGATCCGTTCACCCGCAGCATCCAGCACCTCGCGCTGACCGCGATCCCCTCCGCTTCGGCAGACAGGAGAACGGCTGTCCGATTTCTCTCACAGGCGCTGAACACCTCCGGCTGGTACCACGGTCTGCCGGTACTGGCTCAAGTCGAACCAATGGCGATATCTCCCGTCCGGGACATCTTGCTCGTACATACCCGCGCCGCCCTGGAGCGCAGACCTTCGAGGTGACGACGGAATATGCACGCCTATGACAGGCCGATGAGATCGGGCTCACTCGGATGTGAGTAGTCTCGACACAGATCTGATCGGCACGCTGCGCCACGTCGGGCGACCCATTCCGGACGCCCCGCTCAACGCGACGTGGCCCGTGGACGAGCACCTGGCCGCGCAGCTCGGATGCGGATGCCGGGCTGGTCG # Right flank : CAGGGCGGGCCCGATCCATGGGTCTCCGGCCAATACCACCAACGACCACCGGCACCAACGTGGGACCCAGTCAGCGCCATGGAGCTACTTCATGCTCTGCCCCCGGGAATGCGTCGACTGCGGGTGTGCGACAGCAGCCTGCTGGTGCTGCACGATCCGCTTCGCCTGTTCCTGCTGGACGGTGCGGCGTCCCGTCGTCTCCCGGGCGTGCAGGTCGGGGAACTTTTCGGCGATCGCAGCGCGCAGGGCCTTCTCGGCTCGGGCTTTGGCGGCCTGGGCGCGGTGGCCGGCGGCGAGCTTCCGGAACTCCCCGGCCTGGCGGGTCGCGCGGCTGACGTCGTCGCGGTCGCGTTTGTCCATGCCGTGCCCGTGCCGGGCGGCGGTGGAGCGCATCTCCAGGAAGCGCTCGGCGGCCTGGTCCGCGCGGTCGGGCACCGGCTGGCCTGCTGCACCGAGGGCTTGGGCGATCCGGTGGTCCCGGACAGTCTCCCATGCCCTTT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 34071-33377 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVQ01000014.1 Streptomyces anthocyanicus strain JCM 4739 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 34070 29 100.0 32 ............................. CCTGCGTACCCGCCGCCGCCGAGGCCGTTGTT 34009 29 100.0 32 ............................. GATATTCTTCGCCCGGGATACATTGACGTCGT 33948 29 100.0 32 ............................. TTCGACCGCGAGGGCGTGCCGCTGACGGGCTT 33887 29 100.0 32 ............................. GGGCTCATGACGCCGGACCCCACCCCGACCAC 33826 29 96.6 32 .........................C... CGCCTGCGCCAGCCTGTCCACGACCGGAGCCG 33765 29 100.0 87 ............................. CAGTCGTGCGGCTCGACCGGCTGCGCACCGCCCTGCTCCCCGCACACGCGGTCCCAGCGCCGCCGACGTGGGCACCCCGTAGGTGGC 33649 29 100.0 32 ............................. GAGGAGATCGACGGGATCATGTCCGGCCTGGT 33588 29 96.6 32 ..............T.............. TCTGTGGGGCCGCCGCCGTAGGGCGTCCAGTG 33527 29 93.1 32 ........T.....T.............. GCCACGGTCAAGACCCTCGCCGACAAGCTCGG 33466 29 93.1 32 .............C..............T GAGGACGGCACGTACGACGTGCAGCTCCTCCT 33405 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================= ================== 11 29 98.1 38 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGGCTCGGTGGTGGGGTCCTTGGCCTGTCGGCGAGTGTCGCGGTCTCGGCCCGGCGTGTCGCACACGACGCGCGCGTGCCGGTCGGCAGGGGGCGCGGTGGCTGATCGTTCGTGGGTTGCTGGAGGTGTGGGGAGGGGGTAGAGGCGGGACTGGGGAACCGAGGCGGGGAGCGTCGCAGGTATGCCTGACCTCCGAGCGAAGTTCACTGCCGAGTACGGCGTCGCTGGCGCCCGGGTGGCGCGGCCCAGGCTCGGAGCCAGGCTCGTCACGGGGGTGCCGGCTCCAGGACTTCGGTGCGTTGGCCCTGCCTGGCTTACCGGGTGGTCGGCCGAAGTACGGGAGTCGTTCGGACGGTGCTGCTTCTCTCGTGCGAGCAGATCGAGCTGGCGGTTGGCCTCCACACGTGGAAGCCGCAGGTTGGCGTGTGTACTATTTGCCGGAATCTGTGAAAGTCGCCGAGACCGTGTCTCAGCGGCTGTAAAGATGCAGGTCAAAGAGT # Right flank : TGCGCCGGGCAGAAGACCGAGGCCGATCGTGGCTGCTCCCCGCACCCGCGATCACGCCTGCGGCCGCGGTCCGTTTGCTATGGGCGCAGTTCGGCCGAGCCGGAGCACCGCAAGGAAGCGCCCCCGATCGAGGGGCTTCCACCGACGGCACGTGCCTGAGCCTCTCCTGGAAGCATGATCAAAATTAGAGTGAGGACAAAGGGGGTTCCCCTCGGGAAACCCGGGCAAGCCGGGAAGACACAAACGCACAAGGTGCGGGGAGCGGGGAGGGGCGGATGTGGCCTGGCTGACGAGGGTCGTCGCTGACGAGCAGGTCGAGTACCGGCTCAAGCAGCAGGCCGGGTGCGCAGTCGTGGAGGCCGGGGAGGGCGAGACGGTCGTCCTGGACGCCGTCGAGAGCCGGGCCGTCGACTACCGACTGCGGCCGGAGGGCGGGGCGGCTCTGGTCTGGATGGGCAGCGGTCTGGGAGCTCTGGGACTGGTCGAGGGCGCCGCCCTGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 160054-159234 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVQ01000014.1 Streptomyces anthocyanicus strain JCM 4739 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160053 29 96.6 32 .........................T... TCGACGACACCACCCCCGACGATCCCCGGCTC 159992 29 100.0 32 ............................. GACACCCGCTCCAACGTCGACCCCAACACGAA 159931 29 100.0 32 ............................. ACCTCGGCCGGTTTGCAAGTCCCGTTCGGCGC 159870 29 100.0 32 ............................. ACGATCGCCTCCAGCGCCCAGAGCACGCCGGT 159809 29 96.6 32 ............................G ACTGTTGCGCAAAGTGGCAGGATCAGCCCAGC 159748 29 100.0 32 ............................. CGCGGCTCCGAGAACGGCGCCACGTCGTCCGT 159687 29 100.0 32 ............................. TGGTTCAGGACGCGCAGCTGGTGCCCGCTGAG 159626 29 100.0 32 ............................. AGCTCGTCGGCCTCGCCGCGGTCGGTGACTCC 159565 29 96.6 32 ......A...................... GAACGCGCCGCGAACGAATGGAGCGCCGGTTA 159504 29 100.0 32 ............................. TGCTCCCACGAGGTCACCTTGACCGGCGTGGA 159443 29 100.0 30 ............................. CCCACCCGTCAGCCACCCCAGCGGCAGCTC 159384 29 96.6 32 ............T................ TCGGACAAGACCACGATGACGCGCATGGTCTG 159323 29 100.0 32 ............................. AACGGGTACGCGAAGCGGATCGTGCTCGAGGA 159262 29 93.1 0 ....................C....T... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : TGCCGGCAGAGACATCACGAGTGACCACTGCACCGGCACCGATGGTCACCCCTTGTGTGATCACGGCAGCCGTCCCGATCCAGACGTCGTCCTTGATGACGATCGGAGCGGAGGAGAGGTACTCGCGGCGCTCGGCCAGGGGCAGTGGATGGCCTCCGGTGATGAGGCTGACCTTCGGGGCGATCATGACGCCGTTGCCGATACGGATGCCTTCCTTGTCCATGAAGGTGCATCCCCTGGTTGACGAAGACGTTCTCCCCGAACGCCGTGTTCAGCCCGCACTATGCGTGGCTGGGAAGGCAAAGCTGGCCCTGACGCCTGAGCAGTCCCAGCTCGTGTGCATCCAGGCCTGAGTGAGGAGGGTTCTGGCCGGCAGCATGGACGATTGGCCCGCTCTGAAGTGCCCTATGGATGGGCACCGCGCCATGTCTCATTTGCCGGAATCTGCCAAGCTTGCTGAAAACGCGTCCCTGCGGCCGTAAACTCGCAGGTCAATCAGT # Right flank : ACCAAGCTCGCCAGTAGGCTCGCCTGCGTCGTCGGCGTCTCCGACAGTGACACGGCCTTCGTGACCGGACTGGGCACCGACGGCCGGCGCTGACAGGCATGGCTCAGTCTGGACGATGCTGCGGCGCTCCTGGTCGACGAACCCGAGGACCTGGGCGACCAGAGCCTGTGAGTGAACGCGCCCGGACTCGACGCGCGACGTTCCACCCGACACCCGGGCGCCGGGTGCCCTCGTCCGGGTCGTGACGGCAGGAGTCTCCATGTCGGCGCAGTGGTCCCGGACCGAGCAGGGCCTGCGCTCGTGGGAGAGCCTCGACGAGGGGCCCTTCACCGAGCTGATGAACGATCTGGGCCTTCCCGGCGCTGTCGAGCTCGCGTCGGCTCCGTGACCGCCGCCCGCACCAGCAGTCGCACGGTGAACAGTGCTGACACTAGAGCCACTTGACGACTTGCTGAACAGGGCGCCCCGTCCCGGCCGATCCCGTAGCCTGCGCTGTACGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 172097-171643 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVQ01000014.1 Streptomyces anthocyanicus strain JCM 4739 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172096 29 100.0 32 ............................. TGGGCCCAGCAGTAAGACCACGAGGGAGGACA 172035 29 100.0 32 ............................. CCGGCGAGGGTGCCGAGGAGTCCGGCAGGGCA 171974 29 100.0 32 ............................. TCCACCCAGAGAACACGAAATCCCGGCAGCGA 171913 29 100.0 32 ............................. CGGTAGTCACTCTTCTGGTGCCGTGCCGCGTC 171852 29 100.0 32 ............................. AGATAAGGAGGGGCGTGATGGCCCTGAAGGCA 171791 29 96.6 32 ........T.................... GGCAGCGTGAACGTGCCGTAGTCCCGGCCGTT 171730 29 100.0 30 ............................. AAGGCCGTACGCATAGCCGCGCTCCGCCAG 171671 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GAGGGTGCCGAGGAGTCCGGCAGGGC # Right flank : GTCAGCGGGCTGTCGAGACGCGTGCTGCCGCATGGTCTAACTGTCGGAAGACGAAGAGACCCAGCCCGCGTAGGCCATCGCTGTGCCACCGCCCGCGAAGAGCCGCTCTTGATGACCGAGGCCGCCACATCATGTACGGATGGGCGCAGTTCGAGGAGCCCGGTGCAACAGTGCTGGGAGGCCGCGGGCCCGGGGGAGGGGGCCGCCAACCGGTGGCCGTCATTTGCGTCACTGTTCGAGCGCGAGACGGTGCGACTCAGCTCTCGGGAGCAGGGCCCTCGGCCAGCCGTGGGCGCACCCTGGAAACACGCCGCGATCAGCGCACGGCGCGGATCATCACGGTTAGGACTGGCGACGCCGGTGACGGCTGGCTCTGGCCGATGTCCTCGTACCCCCACGACCGGTAGAGCGCGTGGACCTTGCCGTCGCCCGCAGCCGGATTGACCATCAAGGTGACGAAGGGCTCGTCGCGGGTGGCGAGGAGGGCGTCGTGAATACGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //