Array 1 36025-32945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTR010000010.1 Streptomyces olivaceus strain FXJ8.101 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36024 28 100.0 33 ............................ CCCTTGAGCATCGGCATTGAGGACGAGGACCTG 35963 28 100.0 33 ............................ CTCACCCGTCCCGTTGCGGTAGGCCGTGGCAAC 35902 28 100.0 33 ............................ GATCATCAGCGGGCCGATGGGTGCCGGCACCAC 35841 28 100.0 33 ............................ CCGTGACAGGGGGAGGGGGTGTCGGCGCCGCGG 35780 28 100.0 33 ............................ CTGACGGCGGTCGCCCCGAACACGGTCCGGGCG 35719 28 100.0 33 ............................ CGTCGCCGCGACCCGTTGCGCCCCGCCGGGGCC 35658 28 100.0 33 ............................ CCCGTCCGCCCAGATCACCGCCGTCGAATACGA 35597 28 100.0 33 ............................ GTCCACCACTGCCTCCCCCAGGTCGTTTCCCCC 35536 28 100.0 33 ............................ GCCGCAGCCGCGTTCGAACCACGCGGCGACCGA 35475 28 100.0 33 ............................ CCCAACCCGGTCCAGTGCCTGTTCTGCGGCGGT 35414 28 100.0 33 ............................ CATCAACCCCGGCGACGTCACCGCCGGCGGCGG 35353 28 100.0 33 ............................ CTCGCCGAACAAGCTGGACAAGGGCAGCACGAA 35292 28 100.0 33 ............................ TCAGGCCCTCGACGCCATGACAGGCGTCCAGTC 35231 28 100.0 33 ............................ GCGGAAGGCCACTCCGGCGTCCGAGTCCACAAA 35170 28 100.0 33 ............................ CCACACCAGCCACTGGTGGGTCGGGGGATCCCT 35109 28 100.0 33 ............................ GGTGATTGAGTACCTCCGCCAGGACGAGGACGA 35048 28 100.0 33 ............................ CTGTCGGCGTACGCCTTCCCTCCGATGCCGGCG 34987 28 100.0 33 ............................ GTGGGACATCCTCGACCCGATGGCCGAAGCCAT 34926 28 100.0 33 ............................ GTCGGTGGTCCGCTTCAGCCCGTCGGCCTTCGG 34865 28 100.0 33 ............................ CCCCCACCCCGGCCGGACGGGCGCACCGGTACT 34804 28 100.0 33 ............................ TCGTGAATTACCCCCAGGTTCACCTCCTCGCCG 34743 28 100.0 33 ............................ CTGACAGACCGCCGTCTCGCACTCGGCCCCGTC 34682 28 100.0 33 ............................ CCATGAACGTCGGCGACCATAGCCGCAGATTTG 34621 28 100.0 33 ............................ CGGCCTGCCGACGGTCGAGGAGCGCGTGGGTCT 34560 28 100.0 33 ............................ GCCCGGCCTCGCTGAGGGCGTCGGCCGGGCTTC 34499 28 100.0 33 ............................ TGCGGTCACCGACCGTCCGGCGGGCGTCGAGGA 34438 28 100.0 33 ............................ CGCGCCCCGCTCCGGGGAGTCGTGGGAGGACGT 34377 28 100.0 33 ............................ CAGAATCCCTTGCTCCTGCCGACGCTTACCTCG 34316 28 100.0 33 ............................ CTGCACGGTGCAGGCCGGAACCAACGTCACCGT 34255 28 100.0 33 ............................ TCCGTACGTGGTGAGCGCGGAAGTCCCGTGCGC 34194 28 100.0 33 ............................ GGCACGGCCGCAGTCCAGGCGGCCCTGCGTAAC 34133 28 100.0 33 ............................ GTTCCAGGACCATTTCATCAACGGTGACACGGC 34072 28 100.0 33 ............................ TCAGCGCCACCGGTCGTGGCGCCGCCAGCTGGC 34011 28 100.0 33 ............................ CGCCCTACCCCACGCCCGCATCACCACCCAAGG 33950 28 100.0 33 ............................ GCGCCGCACCGCGCTGCCCGTCCTCGCGGACGT 33889 28 100.0 33 ............................ CGCGGCCACGAACTCCGCACCGCCCGCAACTTC 33828 28 96.4 33 .........A.................. ATGACCCCCGCCTCGACCATTAGGTTGCGCAGG 33767 28 100.0 33 ............................ ATGACCCCCGCCTCGACCATTAGGTTGCGCAGG 33706 28 100.0 33 ............................ CGCGTACAGGTCCTTGATCCACTCGGCTTCCGA 33645 28 100.0 33 ............................ GACGCCGGACTGTCGGTCGGCACGATCAGGAAG 33584 28 100.0 33 ............................ CTGGCCGCCCGCGCCCGGCTGCCCTGAGGCGAC G [33567] 33522 28 100.0 33 ............................ GTTGCTCGGGGCGGCCGCCGACCGCGGTACCGG 33461 28 100.0 33 ............................ CGGGCCGGACGAGAGGACCAGGGCGGCCTGGTC 33400 28 100.0 33 ............................ TCCGCATCCAGGCGTTCCTTGCCGAGGTACGTC 33339 28 100.0 33 ............................ GGGCAGCACCCTGACGCTGCCGCTGACCGAAGC 33278 28 100.0 33 ............................ CTTGCTCTCCCCCCGCGCGATCAGCAGCCCGTC 33217 28 100.0 33 ............................ TGCCGGCGTCGGCCACACCGCGGGCACCCTCGG 33156 28 96.4 33 .................A.......... TGGAGTTGTGGGACTACCGGATACGACTCGTAT 33095 28 96.4 33 .....................A...... GACCGTCACGGTGCTGAGCATCGCGTACGCCGG 33034 28 96.4 33 ...T........................ CGAGGACCCCCTATACCTGCGGGCCATCGCCCC 32973 28 75.0 0 ...........G.........ACGACC. | C [32951] ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.2 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : CCCCCATGCGCCCCAACGGCAGCCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCATGCCTTGCCGCAGTCGTGGATGCCACACACCCACATGAACCAGAGCCGCCCCCGGCCGCCGCTGACCTCGTCCAACCGCCGCCGGAACGCGGGCGCCACGTACCGGTCCCACATCACGCCGGCCACGGCAGCGGTGTCCAGCAGGTGCCCCAGCAGAAGATGCGTTCGACCGTCATTGCGTGCGGCAGACTTCCCCCACAACCGCGACACCCGCTGGACGACCTCGTCGTCCAACTCCATCGCCCGCATCAACGCAACGACCGACCGCTCGTCCTCCACGCCCCGCTCCCTCCCCTGAACCGAGCCGCATGCGGCTAGTTGTGAAGGAACCGTAAACGGTGCCACTGACAATGCCCTCCCGGGCCAAAACGAAGTGAAGGAAAACAGGTACCCTCCCTCACATCACCGCAGCTCACGAAGT # Right flank : CTTTCCCCCGTGCTGCGTCTCACATACCTGTTGCTCGACACGGAAGTTACCGCGGCAGGGCCCCGCCCCTGGCGCGGACGCCGGTCCACTCGCACCACACCACCTTGCCCGGTGACCGTTCCGCCACTCCCCACTTGTCGGCCAGTTCCGACACCAGCAGCAGTCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGGGGTACGGCTGGCACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGCAGCAGCCGCAGCAGGAAGCCCCTGCCAGGTGGTGCGCCGTGCACCAGCGCGTTGGTCGCCAGTTCGCTCACGCACAGCGCCACGTCGTCCGCGCGCTCACACACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAACGCTCACGTGAGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGAGAGTCACGCTCCGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46517-48069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTR010000010.1 Streptomyces olivaceus strain FXJ8.101 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46517 29 100.0 32 ............................. GTGGCCCGGACGGTCATCACGTTGACCGTGGG 46578 29 100.0 32 ............................. GCGCCCCCAGTCGACGGACTGGGGGCGCGTGC 46639 29 96.6 32 ............................G ACGCTCGGAACCTTGATCGTTCTCAAGTTCTC 46700 29 96.6 32 ............................T ACCAGCCACACCTCCCGGAACAGTGACGGGAA 46761 29 96.6 32 ............................G CGTGTGGGGAGTCCGCCGCGGAGGCCGAAGGC 46822 29 100.0 32 ............................. TCCTCACGCGCCTCAGCGACCACCGGACTGCC 46883 29 100.0 32 ............................. TGGCGGGCGTCCTCGGGCCGGGGGACGTCAAC 46944 29 96.6 32 ............................G CGGGACACCGAGGATGCCGTGCGGTCCCGCAT 47005 29 100.0 32 ............................. CGCCCTCGCCTGGGACCGCTGGCCCGACGGCT 47066 29 96.6 32 ............................G GCTGTGGCCACGGGTTGACGCTGCGGCAGTCG 47127 29 100.0 32 ............................. TCGGCGGTGCCGTCCGCGCGGATGATCCACCC 47188 29 96.6 32 ............................G GTGGCCGAGCGCCTCGGCGTGTCCCGCCGGAC 47249 29 100.0 32 ............................. CGGGCCTTTTTGCGTTGGGGCCCTGGTCAGGC 47310 29 100.0 32 ............................. CTCGGCAGCGATGACCGCGCGCTGCGTCTCGC 47371 29 96.6 32 ............................G ACCCTCACGGCCCTGCGCGCCGGGAGCTCCCC 47432 29 96.6 32 ............................G CTGAAGCCCTGCAAGGACTGGCTCGCCTCGCA 47493 29 96.6 32 ............................G ATCGCAGCGCTCGCGCTCCGCCCGGAGGGCTG 47554 29 100.0 32 ............................. AGGCACAGCGGGCCAGGAGCGCCCTCCGCGGG 47615 29 100.0 32 ............................. CCGGGTCTGCATCGACGACGACTTCGGACCGT 47676 29 96.6 32 ..T.......................... CGAGAGGACTCACATGCCCAAGAAGACCAACC 47737 29 96.6 32 ............................G CAGGTCAACGACGTTCACGGCCACGCCGCCGG 47798 29 96.6 32 ............................G CCGCGGGCGTCGCTGGCGAGGCTGAGCGTCCA 47859 29 93.1 31 ..........T.................T GGGACGTGGCCCGGTACTGGCCGGGCCGGTC 47919 29 93.1 32 .......................T.C... CGCCAGGACGTGTCGCCGCTGTAGGCGGTGCA 47980 29 82.8 32 .............T.A..T......C..G GAGCTGCGCGGCCGGTGCCCCGTACGCCGCGC 48041 29 75.9 0 ....C..A.............ACG.CC.. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 96.3 32 GTCGTCCCCGCGCCTGCGGGGGTAGTTCC # Left flank : GGCAGCGACCTGCTGGACGAGGACCTCGGCGCCCTCTGGGACGACGGCGACACCGTCGTCAGCGGCGGCCGCAACTGGAGCGCCACGCACCACCTCGACATCATCCCCGAACCCACCTCCGCAGAGGCGGCCCCGTGAGCGCCGGAACGACCGTAGTCGTACTCATCGCGGCCCCACCCGGCCTCCGCGGACACCTCACCCGCTGGTTCGTCGAGGTGGCCGCCGGCGTCTACGTCGGTAACCCCAACCCCCGCATCCGCGACCGCCTGTGGAGCGTCCTCGCCGAACGCATCCACGACGGCCAGGCCGTCATGATCGAACCGGCAGCCACCGAACAGGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCCTGACCCTCATGGCCCGCCCACGCCAGAACGGACAACCCTGGCGGCCCACGAACGAGGTAAAGCAAAACGGCATGATCACCTGACAAAACACCAGCTCACGAAGA # Right flank : CTTGCAGAGCTTTGTGTGGACGGTGGAAGCGAGGCGGTCGTCTTCTCCAGGCGGATCGGAAACCGCGGAGCGCCGCCGTGGCCGTCATGATGACGATATACGGCTCGGTTCGGTGAGAAGCCAACGTCAAGGCGGCGAGGCGGGCACAACACGAGCGCCAGCGGTGTCTACGCGACTGGCCGTTTGCTCGCCGCTCGCCGCCGTCCGCGGCATCTCATCAATCGCACTCGACTAGCGTCCACCGTCATGTCGTCCCCAAGCGCTCAGCTGCGTCTGACGGGCCCACGGGCCACGTCGGCGGGCTTGTCGAAGCCTCAGCCTTGGGCGTTGCCCCTGCGAGGCGGCAGTTTCCGGTCGTGAGGGGCTCTCTTCTCATCGAACCTCTGTGCCTTGTAGGTTCGCGTGTGCGCAATGAGTTGTTGCTGATGCGCACGGGCTGACGGGGGATGAGCGATGGTGGGGCACCGGCCGACGGATTGGCATGTCCTGGACCTGGACAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 54111-54567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTR010000010.1 Streptomyces olivaceus strain FXJ8.101 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54111 29 100.0 32 ............................. ATCACCACGCGGTTCACGGTGGTCGGTTCCGT 54172 29 100.0 32 ............................. ACCCCAGCCACATCGGCCGGGGGCTCCTTGGT 54233 29 100.0 32 ............................. TGGATCGGGACCTGGAGGACCCAGGAGAACGT 54294 29 96.6 32 .........................C... GACCAGCTCAACGCCCGATGCTGGGTCGACGG 54355 29 93.1 32 ...........A.....A........... GTGTACGTGCACGGGTTGCGGAACTGGTACTC 54416 29 96.6 32 .............G............... TTCGTGGAGTCGTGGATCACGCCGAGGGTGAC 54477 29 75.9 33 ........T..A..A..........GTTT GGCGGGTGCGCAGGTAGAGGCGGTCAAGCGGCG 54539 29 69.0 0 ..A..G.G....T.A.T..CA..C..... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 91.4 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCCGGTCGGGAGAACGAGGAGGAAGCCTGGGGCAGGTTCCGCAAAATGCTCCAGCCGAACAAGCTCGACCGCACCGAGGTGCCGTTCGTCAAGATGCGCTACGACAACACCCGCACACAGAGCATGAGCAAGGGCGACGCCCGCGGCTTCGCGCCTCTGGACACTCTCGTGCGGGAACTGGGGCTGCTCGACGGTGCTCCCGGCAGCTTCGTCGAGTGGGAGAACCGGCACGGCGCCGTCTGGCGGGCGGACAGCAACAGCGACGGCCTCGAGCTGGCACACGACGGCACGCGGGAAACGGTGGACACCGGCCAACTGCAGGCTACGGCCCGCACCAGCGTCCAATGAGCCCGGTCCCGTGCCCATTGCCCACAGAGCCTGCGTAGACGCGCAAGGTGAGTCCGACTTGCATCACATGCTACTCATGCCCCATTTGCCGGATCTTGTAAAAGTCACTGAAAACGTGCCCCTGAGCCCATAAACTCCCAGGTCGGACAGT # Right flank : CTGCGCGGTGGCTGGCTTGGATGGTGTTTCCACCGCACCGGTCGAGACGTTGTGGACCGGATCAATAGGTGAGCGTCATCCGGGTTTCCGGCTTGCTGATGGTGTGGCCTGGGGCGTCCCCGGTGTCGGAGGGCGTGATGGTCAGTCGTGGTACTGCCAGGCGGGCGGCGCCCCACGCGTCGATGTGGGCGACGAGGTCTCGGGCCAGTTCCTCGCCGCGTTGTCCGTATGCGGTCGCGCCGAGTCGGAACGGGCGTTGCGGGTCGGCGTCTTCGCGGGTCACGGTCAGGTAGGCGAGGGAGGCGTCGTCGATCAGGGCGGGGGTGCGGGCAGGTGTGGCGGGCCTGCGGATCAGGGCCTGCTCCATGGCCTCGGGGGTGGCTTCGAGGCGGCATACGCGGTCGTCGTGGGCGCTGGCGCGCAGCCATACTCCGTCGAAGGACTCCTCGCCGCCGATCCGCTGGGCGGACAGGACCTCGCGGGCGGGGTTGTCCGCTCGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 65365-65943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTR010000010.1 Streptomyces olivaceus strain FXJ8.101 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65365 29 96.6 32 ............................G ATCGGCGGATAGATCCGGTCGGTGGGGATGAA 65426 29 100.0 32 ............................. GTCCGCTTCGGCGCGCGTGGCGTGGCGCGTAG 65487 29 100.0 32 ............................. CGGTTCGAGCGACAGACCGGCATCACGCTGGG 65548 29 100.0 32 ............................. GAGCCATCGACGACGGGTACGAGATGGCCGCC 65609 29 100.0 33 ............................. ACCTCCCGCCGCTCCAGGTAGCCGTGCTCGCCC 65671 28 96.6 32 .....................-....... ACGAACCCGGCGACGTCGATCCCCGCCATCGG 65731 29 100.0 32 ............................. ACCCCACAGTCCCCGTACTGCTCGGTGGTCGT 65792 29 100.0 32 ............................. GACAGCAGCCGGCCGGTGCGGCCGTCGTACAG 65853 29 100.0 32 ............................. GGGTCCGTGACCATCGCGGAGAACGGCGTCAG 65914 29 89.7 0 .............T..........AC... | C [65936] ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACACATGTTCACCCGACGACCGCGACCGGGCCGAGTGGCAGCCCGGCAACCCCGCCTGGGGCCACTGCGACATCACGGCGTTGATCGTCAACGACATCTTCGGCGGCGATCGCGTGGTCGGCGAGGTGTACCTCAACGGTGCTCAGCGCAACTTCCACTGGTGGAACCGGCTGCCCAATGGCATCGAGCTCGACCTGACGCGCGAACAGTTCCGCCTCGGACAAACCGTCACGGCCGCCCGTGTCGTCGAACGCCCGCCCGGCCCGCTGCCCCGTCGCTATGAGGAGTACCTCCTGCTCCGCGAGCGCATGGCCGAACACCTCAGCCCGCTTCCGGAGCCTGCGTGAGGGAGAGCCATGCGGCAGTCGGAATCCGCCGGAGCTGTGGTCGACCAACTCTGCGTACGTTCGGACCGATACCGCGGGGTGCCCTATTTGCCGGAATCTTCGAAAGTCACTGAAAACACGCCTCTGCGGCCATAAACTCGCAGGTCAAACAGT # Right flank : CTGCGGAGATCGGCTTCAGGGTCGCTGGGTCAGTTCACTGGAGCTTCTCGCGCGTCTGCGCGCCGCTGGTGGGCGGCGCGCAGACGGGTGGGGTGTGCTCGGTGCGGGGGCGGTCAGGCCCAGCAGCCGTTGACGGTGGCGGCGAGGCCGTCCATGGCGTCCTTGATGTCCGTCGGGTCGGCCGTCGAGTTGTTCTCGATGAAGGAGAAGATCCGCCAGTCGCCGTCCTCGGTCTTCGTGACACCGCTGAGGGCGATGGCGCCGGTGAGGGTGCCGGTCTTGGCCTGGACCTTGCCGACGGCGCACTCGGAGTTGGGGTCGTCGAAGCGGCCCCACTCCGGGCCGAGGCTCGCCCCGGCCTCGCCGGCGACCGGCAGGCCCTCCAGGATCGAGCTGAGGGCGGGGGACTCGGTGATCGAGTCGAGGAGCTGCGCGAGGGTGGCGGCCGGGATGCGGTCGTCGCGGGAGAGGCCGCTGCCGTCGTGCATCTCGAAGTTGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 191633-188614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTR010000014.1 Streptomyces olivaceus strain FXJ8.101 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 191632 28 100.0 33 ............................ CCCTTGAGCATCGGCATTGAGGACGAGGACCTG 191571 28 100.0 33 ............................ CTCACCCGTCCCGTTGCGGTAGGCCGTGGCAAC 191510 28 100.0 33 ............................ GATCATCAGCGGGCCGATGGGTGCCGGCACCAC 191449 28 100.0 33 ............................ CCGTGACAGGGGGAGGGGGTGTCGGCGCCGCGG 191388 28 100.0 33 ............................ CTGACGGCGGTCGCCCCGAACACGGTCCGGGCG 191327 28 100.0 33 ............................ CGTCGCCGCGACCCGTTGCGCCCCGCCGGGGCC 191266 28 100.0 33 ............................ CCCGTCCGCCCAGATCACCGCCGTCGAATACGA 191205 28 100.0 33 ............................ GTCCACCACTGCCTCCCCCAGGTCGTTTCCCCC 191144 28 100.0 33 ............................ GCCGCAGCCGCGTTCGAACCACGCGGCGACCGA 191083 28 100.0 33 ............................ CCCAACCCGGTCCAGTGCCTGTTCTGCGGCGGT 191022 28 100.0 33 ............................ CATCAACCCCGGCGACGTCACCGCCGGCGGCGG 190961 28 100.0 33 ............................ CTCGCCGAACAAGCTGGACAAGGGCAGCACGAA 190900 28 100.0 33 ............................ TCAGGCCCTCGACGCCATGACAGGCGTCCAGTC 190839 28 100.0 33 ............................ GCGGAAGGCCACTCCGGCGTCCGAGTCCACAAA 190778 28 100.0 33 ............................ CCACACCAGCCACTGGTGGGTCGGGGGATCCCT 190717 28 100.0 33 ............................ GGTGATTGAGTACCTCCGCCAGGACGAGGACGA 190656 28 100.0 33 ............................ CTGTCGGCGTACGCCTTCCCTCCGATGCCGGCG 190595 28 100.0 33 ............................ GTGGGACATCCTCGACCCGATGGCCGAAGCCAT 190534 28 100.0 33 ............................ GTCGGTGGTCCGCTTCAGCCCGTCGGCCTTCGG 190473 28 100.0 33 ............................ CCCCCACCCCGGCCGGACGGGCGCACCGGTACT 190412 28 100.0 33 ............................ TCGTGAATTACCCCCAGGTTCACCTCCTCGCCG 190351 28 100.0 33 ............................ CTGACAGACCGCCGTCTCGCACTCGGCCCCGTC 190290 28 100.0 33 ............................ CCATGAACGTCGGCGACCATAGCCGCAGATTTG 190229 28 100.0 33 ............................ CGGCCTGCCGACGGTCGAGGAGCGCGTGGGTCT 190168 28 100.0 33 ............................ GCCCGGCCTCGCTGAGGGCGTCGGCCGGGCTTC 190107 28 100.0 33 ............................ TGCGGTCACCGACCGTCCGGCGGGCGTCGAGGA 190046 28 100.0 33 ............................ CGCGCCCCGCTCCGGGGAGTCGTGGGAGGACGT 189985 28 100.0 33 ............................ CAGAATCCCTTGCTCCTGCCGACGCTTACCTCG 189924 28 100.0 33 ............................ CTGCACGGTGCAGGCCGGAACCAACGTCACCGT 189863 28 100.0 33 ............................ TCCGTACGTGGTGAGCGCGGAAGTCCCGTGCGC 189802 28 100.0 33 ............................ GGCACGGCCGCAGTCCAGGCGGCCCTGCGTAAC 189741 28 100.0 33 ............................ GTTCCAGGACCATTTCATCAACGGTGACACGGC 189680 28 100.0 33 ............................ TCAGCGCCACCGGTCGTGGCGCCGCCAGCTGGC 189619 28 100.0 33 ............................ CGCCCTACCCCACGCCCGCATCACCACCCAAGG 189558 28 100.0 33 ............................ GCGCCGCACCGCGCTGCCCGTCCTCGCGGACGT 189497 28 100.0 33 ............................ CGCGGCCACGAACTCCGCACCGCCCGCAACTTC 189436 28 96.4 33 .........A.................. ATGACCCCCGCCTCGACCATTAGGTTGCGCAGG 189375 28 100.0 33 ............................ CGCGTACAGGTCCTTGATCCACTCGGCTTCCGA 189314 28 100.0 33 ............................ GACGCCGGACTGTCGGTCGGCACGATCAGGAAG 189253 28 100.0 33 ............................ CTGGCCGCCCGCGCCCGGCTGCCCTGAGGCGAC G [189236] 189191 28 100.0 33 ............................ GTTGCTCGGGGCGGCCGCCGACCGCGGTACCGG 189130 28 100.0 33 ............................ CGGGCCGGACGAGAGGACCAGGGCGGCCTGGTC 189069 28 100.0 33 ............................ TCCGCATCCAGGCGTTCCTTGCCGAGGTACGTC 189008 28 100.0 33 ............................ GGGCAGCACCCTGACGCTGCCGCTGACCGAAGC 188947 28 100.0 33 ............................ CTTGCTCTCCCCCCGCGCGATCAGCAGCCCGTC 188886 28 100.0 33 ............................ TGCCGGCGTCGGCCACACCGCGGGCACCCTCGG 188825 28 96.4 33 .................A.......... TGGAGTTGTGGGACTACCGGATACGACTCGTAT 188764 28 96.4 33 .....................A...... GACCGTCACGGTGCTGAGCATCGCGTACGCCGG 188703 28 96.4 33 ...T........................ CGAGGACCCCCTATACCTGCGGGCCATCGCCCC 188642 28 75.0 0 ...........G.........ACGACC. | C [188620] ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.2 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : CCCCCATGCGCCCCAACGGCAGCCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCATGCCTTGCCGCAGTCGTGGATGCCACACACCCACATGAACCAGAGCCGCCCCCGGCCGCCGCTGACCTCGTCCAACCGCCGCCGGAACGCGGGCGCCACGTACCGGTCCCACATCACGCCGGCCACGGCAGCGGTGTCCAGCAGGTGCCCCAGCAGAAGATGCGTTCGACCGTCATTGCGTGCGGCAGACTTCCCCCACAACCGCGACACCCGCTGGACGACCTCGTCGTCCAACTCCATCGCCCGCATCAACGCAACGACCGACCGCTCGTCCTCCACGCCCCGCTCCCTCCCCTGAACCGAGCCGCATGCGGCTAGTTGTGAAGGAACCGTAAACGGTGCCACTGACAATGCCCTCCCGGGCCAAAACGAAGTGAAGGAAAACAGGTACCCTCCCTCACATCACCGCAGCTCACGAAGT # Right flank : CTTTCCCCCGTGCTGCGTCTCACATACCTGTTGCTCGACACGGAAGTTACCGCGGCAGGGCCCCGCCCCTGGCGCGGACGCCGGTCCACTCGCACCACACCACCTTGCCCGGTGACCGTTCCGCCACTCCCCACTTGTCGGCCAGTTCCGACACCAGCAGCAGTCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGGGGTACGGCTGGCACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGCAGCAGCCGCAGCAGGAAGCCCCTGCCAGGTGGTGCGCCGTGCACCAGCGCGTTGGTCGCCAGTTCGCTCACGCACAGCGCCACGTCGTCCGCGCGCTCACACACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAACGCTCACGTGAGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGAGAGTCACGCTCCGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 202125-203677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTR010000014.1 Streptomyces olivaceus strain FXJ8.101 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202125 29 100.0 32 ............................. GTGGCCCGGACGGTCATCACGTTGACCGTGGG 202186 29 100.0 32 ............................. GCGCCCCCAGTCGACGGACTGGGGGCGCGTGC 202247 29 96.6 32 ............................G ACGCTCGGAACCTTGATCGTTCTCAAGTTCTC 202308 29 96.6 32 ............................T ACCAGCCACACCTCCCGGAACAGTGACGGGAA 202369 29 96.6 32 ............................G CGTGTGGGGAGTCCGCCGCGGAGGCCGAAGGC 202430 29 100.0 32 ............................. TCCTCACGCGCCTCAGCGACCACCGGACTGCC 202491 29 100.0 32 ............................. TGGCGGGCGTCCTCGGGCCGGGGGACGTCAAC 202552 29 96.6 32 ............................G CGGGACACCGAGGATGCCGTGCGGTCCCGCAT 202613 29 100.0 32 ............................. CGCCCTCGCCTGGGACCGCTGGCCCGACGGCT 202674 29 96.6 32 ............................G GCTGTGGCCACGGGTTGACGCTGCGGCAGTCG 202735 29 100.0 32 ............................. TCGGCGGTGCCGTCCGCGCGGATGATCCACCC 202796 29 96.6 32 ............................G GTGGCCGAGCGCCTCGGCGTGTCCCGCCGGAC 202857 29 100.0 32 ............................. CGGGCCTTTTTGCGTTGGGGCCCTGGTCAGGC 202918 29 100.0 32 ............................. CTCGGCAGCGATGACCGCGCGCTGCGTCTCGC 202979 29 96.6 32 ............................G ACCCTCACGGCCCTGCGCGCCGGGAGCTCCCC 203040 29 96.6 32 ............................G CTGAAGCCCTGCAAGGACTGGCTCGCCTCGCA 203101 29 96.6 32 ............................G ATCGCAGCGCTCGCGCTCCGCCCGGAGGGCTG 203162 29 100.0 32 ............................. AGGCACAGCGGGCCAGGAGCGCCCTCCGCGGG 203223 29 100.0 32 ............................. CCGGGTCTGCATCGACGACGACTTCGGACCGT 203284 29 96.6 32 ..T.......................... CGAGAGGACTCACATGCCCAAGAAGACCAACC 203345 29 96.6 32 ............................G CAGGTCAACGACGTTCACGGCCACGCCGCCGG 203406 29 96.6 32 ............................G CCGCGGGCGTCGCTGGCGAGGCTGAGCGTCCA 203467 29 93.1 31 ..........T.................T GGGACGTGGCCCGGTACTGGCCGGGCCGGTC 203527 29 93.1 32 .......................T.C... CGCCAGGACGTGTCGCCGCTGTAGGCGGTGCA 203588 29 82.8 32 .............T.A..T......C..G GAGCTGCGCGGCCGGTGCCCCGTACGCCGCGC 203649 29 75.9 0 ....C..A.............ACG.CC.. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 96.3 32 GTCGTCCCCGCGCCTGCGGGGGTAGTTCC # Left flank : GGCAGCGACCTGCTGGACGAGGACCTCGGCGCCCTCTGGGACGACGGCGACACCGTCGTCAGCGGCGGCCGCAACTGGAGCGCCACGCACCACCTCGACATCATCCCCGAACCCACCTCCGCAGAGGCGGCCCCGTGAGCGCCGGAACGACCGTAGTCGTACTCATCGCGGCCCCACCCGGCCTCCGCGGACACCTCACCCGCTGGTTCGTCGAGGTGGCCGCCGGCGTCTACGTCGGTAACCCCAACCCCCGCATCCGCGACCGCCTGTGGAGCGTCCTCGCCGAACGCATCCACGACGGCCAGGCCGTCATGATCGAACCGGCAGCCACCGAACAGGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCCTGACCCTCATGGCCCGCCCACGCCAGAACGGACAACCCTGGCGGCCCACGAACGAGGTAAAGCAAAACGGCATGATCACCTGACAAAACACCAGCTCACGAAGA # Right flank : CTTGCAGAGCTTTGTGTGGACGGTGGAAGCGAGGCGGTCGTCTTCTCCAGGCGGATCGGAAACCGCGGAGCGCCGCCGTGGCCGTCATGATGACGATATACGGCTCGGTTCGGTGAGAAGCCAACGTCAAGGCGGCGAGGCGGGCACAACACGAGCGCCAGCGGTGTCTACGCGACTGGCCGTTTGCTCGCCGCTCGCCGCCGTCCGCGGCATCTCATCAATCGCACTCGACTAGCGTCCACCGTCATGTCGTCCCCAAGCGCTCAGCTGCGTCTGACGGGCCCACGGGCCACGTCGGCGGGCTTGTCGAAGCCTCAGCCTTGGGCGTTGCCCCTGCGAGGCGGCAGTTTCCGGTCGTGAGGGGCTCTCTTCTCATCGAACCTCTGTGCCTTGTAGGTTCGCGTGTGCGCAATGAGTTGTTGCTGATGCGCACGGGCTGACGGGGGATGAGCGATGGTGGGGCACCGGCCGACGGATTGGCATGTCCTGGACCTGGACAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //