Array 1 109829-109595 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802578.1 Streptococcus sp. HMSC057E02 Scaffold108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 109828 36 88.9 30 NNNN................................ ATGGCCGTTTATTTGGTGACAATACGCTCT 109762 36 100.0 30 .................................... AGAGCTGGATTGAACTCAATTGGTACGATA 109696 36 100.0 30 .................................... CAGCAAGTGTTATTGCTATGGCTGGGAATA 109630 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TCGAATGGTTCCAAAACGCCTGTCGGCGTGAACGAAAGGGCGACACAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTGTAGTCCGTCACCAATCAGAAATCCTGGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCCCAGCGCTTTTACCTGCTGCACTAGCTTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTACGAGGGAACGAGCGGATATGACAACGTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGTGGTCACTACATCAGCTAGTGTCAATAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTGTTTTTATGCAAACATGAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGTCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 110155-109921 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802578.1 Streptococcus sp. HMSC057E02 Scaffold108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 110154 36 88.9 30 NNNN................................ GTGTAGTCCGTCACCAATCAGAAATCCTGG 110088 36 100.0 30 .................................... CCCAGCGCTTTTACCTGCTGCACTAGCTTC 110022 36 100.0 30 .................................... TACGAGGGAACGAGCGGATATGACAACGTT 109956 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GTTTCGAATGGTTCCAAAACCACCCCTTTAATTTTTTAGGCTATCCATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCCAGCTATGCGCGTAAGTACGCTTTGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGTCCTATTCATATCAAGAAACCTCTTTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGCCTGTCGGCGTGAACGAAAGGGCGACACAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGGCCGTTTATTTGGTGACAATACGCTCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGAGCTGGATTGAACTCAATTGGTACGATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGCAAGTGTTATTGCTATGGCTGGGAATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGTGGTCACTACATCAGCTAGTGTCAATAAGTTTTAGAGCTGTGCTGT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 110803-110635 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802578.1 Streptococcus sp. HMSC057E02 Scaffold108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 110802 36 100.0 30 .................................... TGGCACGCCGACTCAGAAGGTTATAATTTC 110736 36 100.0 30 .................................... AAAGGGATGGAAAATATTTCTGAAATAAGA 110670 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGGGGATGAAATCCCAGATTATTTGAGAGGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAAAGCAATCCTCCGAGCTGATGAAGGAGGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATTATAGAGATGCTATTAGGTCGGTATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGCCTTCCCTTACAATTATTATAGCAAAGA # Right flank : CACCCCTTTAATTTTTTAGGCTATCCATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCCAGCTATGCGCGTAAGTACGCTTTGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGTCCTATTCATATCAAGAAACCTCTTTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGCCTGTCGGCGTGAACGAAAGGGCGACACAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 111193-110959 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802578.1 Streptococcus sp. HMSC057E02 Scaffold108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 111192 36 100.0 30 .................................... AGGGGATGAAATCCCAGATTATTTGAGAGG 111126 36 100.0 30 .................................... CAAAGCAATCCTCCGAGCTGATGAAGGAGG 111060 36 100.0 30 .................................... AATTATAGAGATGCTATTAGGTCGGTATAT 110994 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTATCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGCCTTCCCTTACAATTATTATAGCAAAGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGCACGCCGACTCAGAAGGTTATAATTTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAAGGGATGGAAAATATTTCTGAAATAAGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCACCCCTTTAATTTTTTAGGCTATCCATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20899-21079 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802585.1 Streptococcus sp. HMSC057E02 Scaffold144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 20899 38 100.0 32 ...................................... CTTTAGAAATCATCTTACGAGCAATACTATTA 20969 38 100.0 35 ...................................... GAAAAAGAACGGTAGATTAAACCATTCAGTAACAT 21042 38 84.2 0 ................................NNNNNN | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 94.7 34 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACT # Left flank : TTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAAACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGACATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATATGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATGGGGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACATAATTTGTTTCATGATATCCTTCTTTCTGTCAATGTTAATAACCCATGTTACCTCGAGAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCATGTTACCTCGAGAGGGGACGGAAACTGACCTTCCCATTTATTATAGATGATGTTCATAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACCCATGTTACCTCGAGAGGGGACGGAAACAAGTCATGTTTTCGATTTTACTTTCTTTTTTTCGGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACCCAAGCACCTTTCCAATATAAACCAACTTCACACAAAGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACTTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTTGTTAATAACCCATGTTACCTCGAGAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACCCATGTTACCTCGAGAGGGGACGGAAACATTGCAGACTTCACATGTGTCTAATTC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 21170-21423 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802585.1 Streptococcus sp. HMSC057E02 Scaffold144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 21170 37 89.2 34 NNNN................................. AAGTCATGTTTTCGATTTTACTTTCTTTTTTTCG 21241 37 100.0 37 ..................................... CCAAGCACCTTTCCAATATAAACCAACTTCACACAAA 21315 37 100.0 35 ..................................... TTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTT 21387 37 89.2 0 .................................NNNN | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 94.6 36 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : ATTTGTTTCATGATATCCTTCTTTCTGTCAATGTTAATAACCCATGTTACCTCGAGAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCATGTTACCTCGAGAGGGGACGGAAACTGACCTTCCCATTTATTATAGATGATGTTCATATGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACTCTTTAGAAATCATCTTACGAGCAATACTATTAGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACTGAAAAAGAACGGTAGATTAAACCATTCAGTAACATGTTAATAACCCATGTTACCTCGAGAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACCCATGTTACCTCGAGAGGGGACGGAAACATTGCAGACTTCACATGTGTCTAATTCTTCGTCTGGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACTTTTGTTCTGACATAATTGTCCTCCTTCTTAATTTGGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACTCGTTCTGTGTTTGCGCAAGCTGCAAAGGATTTTAAGTTAATAACCCATGTTACCTCGAGAGGGGATTTTTTACATGAAATTCGCACAGATACTTGACGACGCTTTCATATTATGCTAATATATTGATTGTAAAGAATAGTTCTGATAAACAGAGAGGGCGCCCTTAACTGGTGAAAAATACTTTCACTTTTTGGGGTGCTTTTTTAGTAAGGAAGGTTAGAAATG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 21520-21762 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802585.1 Streptococcus sp. HMSC057E02 Scaffold144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 21520 25 100.0 47 ......................... CGGAAACATTGCAGACTTCACATGTGTCTAATTCTTCGTCTGGTTAA 21592 25 100.0 48 ......................... CGGAAACTTTTGTTCTGACATAATTGTCCTCCTTCTTAATTTGGTTAA 21665 25 100.0 48 ......................... CGGAAACTCGTTCTGTGTTTGCGCAAGCTGCAAAGGATTTTAAGTTAA 21738 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================ ================== 4 25 100.0 48 TAACCCATGTTACCTCGAGAGGGGA # Left flank : AGATTAAACCATTCAGTAACATGTTAATAACCCATGTTACCTCGAGAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACCCATGTTACCTCGAGAGGGGACGGAAACAAGTCATGTTTTCGATTTTACTTTCTTTTTTTCGGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACCCAAGCACCTTTCCAATATAAACCAACTTCACACAAAGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACTTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTTGTTAATAACCCATGTTACCTCGAGAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATTTTTTACATGAAATTCGCACAGATACTTGACGACGCTTTCATATTATGCTAATATATTGATTGTAAAGAATAGTTCTGATAAACAGAGAGGGCGCCCTTAACTGGTGAAAAATACTTTCACTTTTTGGGGTGCTTTTTTAGTAAGGAAGGTTAGAAATGTGAAGAAAGTACAATTGTATTTATCAAACGTTGAAATAAGAGACGATGCTCTAGTATCTAAGTTGCAAGGATTTCTAATGAGCCAGATTTCGGAGGATTTTGTGGATTTTCTTCATGAACAAGAGACAAATCCCTACTCTTTAAATCTATTATCCACGAGAGAAGGAACGATATGGACGGTCAATCTACTTACCCAAGAAGCAGAAGAGAAGATATTGCCTCAGCTTCTGGATTTAGAAGAGATTCAGTTAGATACTTACTCAGGAGCCATATCTGTAAAGAGAATAGAGATTCAGACTTTATCACAAGAGACCTTATTGGAAATTTTTCGGGAGGATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACCCATGTTACCTCGAGAGGGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 4 30470-30648 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802585.1 Streptococcus sp. HMSC057E02 Scaffold144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 30470 37 100.0 35 ..................................... TTACAGCATCGTCGTAACAAGTTACAGGTTTTTTT 30542 37 100.0 33 ..................................... CCTGGTGTGTGAATCAAAACTTTGTTTGACTTA 30612 37 86.5 0 ..........C....................AA..TA | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 95.5 34 GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Left flank : CAAGCTAAACCTGTCGCACCCAGATGCCGATGCTATCATTGACTATCTGGAGCATGAGATGAAGAAGGAGCGTGGGAGTGAAAGCAAGGAAAGAGTCTATAACAAGACTTCTACTTTAAACCTTTTGTCTTTTAGCAATATTTTGGAATTTTATCAGGCGGAAGAGTCTTTACTGGAAAGTATCAAATTAGTGAAGAGTTTTAACGGGGAAAGAAATCGTCTAGCACATGGTCTCGCTGAAATCGATAAAAAGGCAATTAGCTCAAAAAGATTGCGCGCCTTGTTGGGAACATTAAAGGATGTCCTCCAGTCCAACTATGATATTAGAGAAGAACGATTCTCCTATTACGATGTTAAGAATGAGGAGTTACTTGAACTGCTCAAGTAGCTCTCAGTTCTTCCTTTTTGGTTCAAAATATGTTATAATCAAAGAAGTTTCCACTTTTGGGCTGTTAAAACAAGATATGGTGGTTTTCTGGTATTTATGTACAAAATATAGG # Right flank : AGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAGACAAAGGCTATCTATTTTTTGTAAAAAATCCGAAATTTTAGTATAATAAAAAGACTAGAAGTATGAGGTAATGCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAGATCACAATAAAATTAGAAGATTTAGAAGAACATGGAATGGAGATGTCAGATTTTCTTGTTCCGCAAGAAAAGACAGAAGAGTTTTTCTATGCAATTTTAGATGAGTTGGAAATGCCAGAGAGTTTTTTGGATAGCGGTATGCTCAGTTTTCGTGTAACTCCTAAACCAGACCGACTGGACGTGTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGAGGATTTGGCGGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCAGATGAATTTTTAAAGACATTA # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //