Array 1 40122-41015 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ATAA01000014.1 Streptococcus mitis 18/56 contig00014, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     40122	    36	 100.0	    30	....................................	GAAGAATTAGTCTAGTAAGGCCTTCAATGT 	
     40188	    36	 100.0	    30	....................................	TAACAACCATTGGATCTTCCTGATTTGTCG 	
     40254	    36	 100.0	    30	....................................	TGAAGCAAATGCTTGTCAGTCGCGGTTATG 	
     40320	    36	 100.0	    30	....................................	TTGGAACCCCCAAAGTATATATAAAGTAAG 	
     40386	    36	 100.0	    29	....................................	CTTTCCCAAGATTTACAACAACAGACGAC  	
     40451	    36	 100.0	    30	....................................	CGGTTGCTTATGGCTTTAAACGACAGGAAG 	
     40517	    36	 100.0	    30	....................................	GATTAGACACCTAAATTATATCAAAAGCTT 	
     40583	    36	 100.0	    30	....................................	GCCGAGGCTCTAGACCGTGAGAGCTACAAG 	
     40649	    36	 100.0	    30	....................................	ATTTTTTGAAAAAGGAGCGGTAAACCGACA 	
     40715	    36	 100.0	    30	....................................	GTCTCATCATACTAATCGCCCTAGTTATCG 	
     40781	    36	 100.0	    31	....................................	CCGGCCATAAATGTATCGGATTTTGTGAGAT	
     40848	    36	 100.0	    30	....................................	CAAAACCTAGTTTTGACCTTTAACCAACAT 	
     40914	    36	 100.0	    30	....................................	AATTGTCATAGTTCTCTTGTGCGTTGGATA 	
     40980	    36	  94.4	     0	..................................TT	|                              	
==========	======	======	======	====================================	===============================	==================
        14	    36	  99.6	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                               	       

# Left flank :   GGACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATGCCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAATAAAATTCTGTATTGAATCAATCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG
# Right flank :  TTAGATAATATTAACAATTGTTTAACTTATATAAAAACCCGCTCTGCTGAGCGGGTTTCGTCTATTCTTATCTTCTTACAGTACCCATGTACGGATGGCATGGGCAACGCCAGATTCGTCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGATTTCTGGATTTCCATTTTCCATGACAACGGGGTTTCCAACGACTTCCAGCATGGCACGGTCATTTTCTTCGTCTCCGATAGCCATGGTTTCATCTTTGGTCAATCTGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCTTTGTTTACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCAGACTTGTTGATAGAGTAGCGTTCGTAAAATTCTGCTGGGATTTTTTCAATCGCAGCATCGAGAATCTCTGGTTCATCAATAAACATACACTTGACGATTTCTTTATCAGCCATTTCTTCAGGAGTTCGGTAGAAAATAGGCATGCTGACGAGGGTTGATTCGT

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//