Array 1 384529-385119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPH010000001.1 Nocardia farcinica strain BJ06-0065 NODE_1_length_761614_cov_56.937417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 384529 28 100.0 33 ............................ TAGACTCTTTTCTCGTGTTGTGTGATCGGCCGT 384590 28 100.0 33 ............................ CCGCGAAGGCGGAGGCGAGGACGAGAGCGACAG 384651 28 100.0 33 ............................ CCAGAGAGCCGGTCACCACGAGCGCGCCCGTCG 384712 28 100.0 33 ............................ CCACGGTCGCTTCACGACGTCCTCCTCTCAGGC 384773 28 100.0 33 ............................ CATGCGTCGTAGAGGGCGGTAGCGGTCGCCTCA 384834 28 100.0 33 ............................ CACCGGCCGTTCCGGGCTGCTCTCCTTGTCCGC 384895 28 96.4 33 ...................A........ CCCGTTTTCCGGCAACGTGACCTCTTCGGGTAG 384956 28 96.4 33 ..............C............. GCACCCCGTCCGGCGCAACAAGACCGCCCGCGA 385017 28 92.9 48 ..............C..........A.. CCCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTCGAC 385093 27 75.0 0 A..T....G..A.....-C........A | ========== ====== ====== ====== ============================ ================================================ ================== 10 28 96.1 35 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GTCGCCCGATGTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTTCGTGGGCCTTGTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCGTGTCGCTCGCTAAGGTTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTCGGGAGGTGAGGAACCGACTGAAAGTGATTGAAAAAGGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : ATGGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCGCACGAGGGCGACCCCTCGGCTGGTAACGCCACCCCGCCGCGTGTGCCCCACGCGTGCGGGCAGCAGAACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTACCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACCGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 394302-395793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPH010000001.1 Nocardia farcinica strain BJ06-0065 NODE_1_length_761614_cov_56.937417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 394302 28 100.0 33 ............................ ACTGTGATTGACAGTGTGGAAATCTACGTATGC 394363 28 100.0 33 ............................ CGACACGACCCTGCAGCGGATCGTGATCGCCTG 394424 28 100.0 33 ............................ CGCCTTCGACCCGGCCGACATGACCGCCGCGTC 394485 28 100.0 33 ............................ CGCAGGCGCGAGCGCAGCTCGCGAACGACGGCG 394546 28 92.9 33 ..........................AA ACCGGCGTGCGGGAAAAGGTGCAGGCCGTGGTA 394607 28 100.0 33 ............................ GGCGAGACCCACGGCCGCACCATCGGCATCGGC 394668 28 100.0 33 ............................ CGAACTCCACCGTGCTACCGTCGTCGACGCCGC 394729 28 100.0 33 ............................ CCACCACCGGCGGCGGCGTGAACTCGGCCGGGG 394790 28 100.0 33 ............................ CGGCGGCATCACCCGCACCGTCACCATCCAGCT 394851 28 100.0 33 ............................ CCTTGACCGGGGTGTTCGCGCGTTCGGCTTCCC 394912 28 100.0 33 ............................ CCAGGCCGTGGCCGACACGTCGTAGACGCCGGT 394973 28 100.0 33 ............................ GTCGACGTAGCCGATGAGCGGGCGGGTGGCGTC 395034 28 100.0 33 ............................ CTGGTGCACGGTCAGCAGGTGCGGGGCGTGCTC 395095 28 100.0 33 ............................ CGAGTGGCGCGCCGAAGCACGCCGCAACACGTG 395156 28 100.0 33 ............................ CCGCCGGCTGCACCTGCCGCGACCCGGCCGAAA 395217 28 100.0 33 ............................ CGCCTCGAACCAGGTGCGCATCCCGGCCGCGAC 395278 28 100.0 33 ............................ CTCGAGCCGGGCGACGTTGTAGGCGTGCGCCGC 395339 28 100.0 33 ............................ CATCCGCGACATCGCGGGGGTCGACGACAATTC 395400 28 100.0 33 ............................ CACAGCGGCCTGGTCGTCCCATGGGGCGCTGAG 395461 28 100.0 33 ............................ CGACAGGGGAGACCTGTCCGGTGTCCGCACCGT 395522 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 395583 28 100.0 33 ............................ CCGGTCCTCACCCGTGTCGGGCCCGCGGTACTG 395644 28 96.4 33 ........G................... CTCGAACGGCAGCGTCCAGAGGTCGCCCTCGGT 395705 28 100.0 33 ............................ CCAGCCAGCAGCGAATGCGTTGGCGGTCAGCAT 395766 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTTGTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCGGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGGGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGCCCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGGGGAGGCGGCCGCGTCGACGTTAGGTAACGACTGCGTACACCTCACCCCCCGGAGATAGCTATCTGATTGCGGCGGGGCCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCGGTGTTGTCGGCACCCGGTCTCCCGGTCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 522899-523718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPH010000001.1 Nocardia farcinica strain BJ06-0065 NODE_1_length_761614_cov_56.937417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 522899 29 96.6 32 ..............T.............. GACCCGGACGCGATCACCGATTCGGCGTTGCC 522960 29 100.0 32 ............................. AGTGTGCAACAGTGGCCGCTTGGCTACAGTGC 523021 29 100.0 32 ............................. CCCTGCACACCCAACCCGAAGCGGACCGGGTC 523082 29 100.0 32 ............................. GGCAACCATGATGAGGGCCAGCGATTCATGAC 523143 29 100.0 32 ............................. GGGAGAAACGCCCGCAATAGTGGCGGCGCTTC 523204 29 100.0 32 ............................. TGCGAGACGTCGGTCCAGGTGGTGCCCATTAG 523265 29 100.0 32 ............................. GCGTGGCTAGGGGTGTCACACGTCGCCAGCGG 523326 29 100.0 32 ............................. ATCTCCACGACGGCGGGCACGTTCTCGATCGT 523387 29 96.6 32 A............................ ACCGCTGACGGCCCTGACATCGGCGACAGCCC 523448 29 96.6 32 ..............T.............. AGCGGGATCAACGGCGCGACTGCGGTGACCAG 523509 29 93.1 32 ..............T.............G TACTGGGATGAGGTCCAGCGCCGCCAGGTCGA 523570 29 96.6 32 ..............T.............. CCGGTACCGCCGCCGCCACCCCCGCCCCCGCC 523631 29 93.1 32 ..............T...........T.. GACGACAACAACCTATGGGTGCTGTGCGGCAG 523692 27 86.2 0 ............--.........A.T... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGCGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGTGGTCGACTGCAAGCGAGGTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGAGGTATTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACAACTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGAACCTCCCAGTCGAAGGCCGCGCGGCGCCGCCCCTTCGCATTCCTAGACGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCATGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 123314-123951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPH010000011.1 Nocardia farcinica strain BJ06-0065 NODE_11_length_246096_cov_61.541243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123314 29 100.0 32 ............................. ACGCCGCCGCACTTCACGCACACCGCGATCAC 123375 29 100.0 32 ............................. GAGCGCTTGACCGGGATCATCGTCGAGCAGGC 123436 29 100.0 32 ............................. GGGGCGCCGCTGTATGAGTGCGTGGCTATCGC 123497 29 100.0 32 ............................. CCGTCGCTGCCCTCGCGCATGCCGCGCATGAG 123558 29 100.0 31 ............................. CGGGCGGCACGTCGAACCGCTTCGGGTCATC 123618 28 93.1 32 T.......-.................... CCGTGGACGCGGTACTGGTCGACCAGCACGTT 123678 29 100.0 32 ............................. TCCTCCGCCGACTCCACCGCCAGCACCCGGTC 123739 29 100.0 32 ............................. CCTTGGTTCCCGGAGTGGATCCAGTGGCCGCA 123800 29 100.0 32 ............................. ATGCTCGGGAGCGAGCGCCGCTATCAGATCGT 123861 29 100.0 33 ............................. GCAGTCCTCTCAGCCTGTCGAAACAGCTCCCAG 123923 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.1 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGATCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGGCGGTCTCTCACGCGCCCCTTGGGAAGATCGCCGGCAACTGAAATGGGTTCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGTCAGGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGTGGAAATGACTGGGGCGCCACCTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTTCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCCGCGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 315-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPH010000132.1 Nocardia farcinica strain BJ06-0065 NODE_133_length_322_cov_0.882051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 314 28 100.0 33 ............................ CCGCCGGCTGCACCTGCCGCGACCCGGCCGAAA 253 28 100.0 33 ............................ CGCCTCGAACCAGGGGCGCATCCCGGCCGCGAC 192 28 100.0 33 ............................ CTCGAGCCGGTCGACGTTGTAGGCGTGCGCCGC 131 28 100.0 33 ............................ CATCCGCGACATCGCGGGGGTCGACGACACTTC 70 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : GTGGCGT # Right flank : CCACAGCGGCCTGGTCGTCCCATGGGGCGCTGAGGTGCTCCCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //