Array 1 31360-28102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSJ010000007.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 1614 CIRM_BIA1614-i1-1_scf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 31359 28 100.0 33 ............................ TACGAGAACTTGGAGCCGCAAGTCAAGATTACT 31298 28 100.0 33 ............................ CTTAATAAAAGATTTTACTGAACTGTACCTCCG 31237 28 100.0 33 ............................ CGGCTGAAGGCTTTAAACAGGCCGTCAAACTCT 31176 28 100.0 33 ............................ TGTTAGTGCAGGCATTTATAGAGAAGAAAAGAA 31115 28 100.0 33 ............................ TGTTTACAAGGACGATGCTACCGCTTTGGACGG 31054 28 100.0 33 ............................ CATCAGTCGCTTGTTCAGCCGTTTGAAAAACAG 30993 28 100.0 33 ............................ TTCTTCAGAATGACCATTTCAACCCGTCTAGGG 30932 28 100.0 33 ............................ TAATAATCAAGATTGACAAGAGGAGGGCTGACA 30871 28 100.0 33 ............................ TAACTCTCTTGAAGTCATCAAGACGGTAGCCCT 30810 28 100.0 33 ............................ CTTGAAGCCGTACCAATACACTGCTCAGGGCTC 30749 28 100.0 33 ............................ TGTCGCTGTTTTAAATGGTCGTCTTACGAAAGA 30688 28 100.0 33 ............................ TCAACTTTTAGCTACGAGGAGTTGTTTTTAATG 30627 28 100.0 33 ............................ TAATATATACTAGGGCTAGATTCAAGGCTGTAA 30566 28 100.0 33 ............................ TCAAACTTAATTCATCGGGATAAAAATCTGATG 30505 28 100.0 33 ............................ CCAGAAACTGCCATATCCGACCGTTGCCTGATC 30444 28 100.0 33 ............................ TGTATGGAATTCCCGCCTGCTTGCAGATTCTCG 30383 28 100.0 33 ............................ TTGGAGGTAAGAGATGCTGGAAACAATAGCAAT 30322 28 100.0 33 ............................ TTATAGATAAGCGAGGGGATGCACCAGCACGAG 30261 28 100.0 33 ............................ CGAAATTACAGCGACCAGCAACAACACGCAAAA 30200 28 100.0 33 ............................ TCGTTTGCGGCCGCTTGCAAGTTTCTTTCCAAA 30139 28 100.0 33 ............................ CGTCCGGCCAATCGAAGCGGCGGCGGCCTTAGT 30078 28 100.0 33 ............................ CGCCTGGACTAACTGAAGTGTGTTGCCGTTGCC 30017 28 100.0 33 ............................ TTCTTCGATATTGAAAAAGCGGCGGCGCTTTTT 29956 28 100.0 33 ............................ TTCACGTGCTCCACTCAAAACAGTGGCCAGATC 29895 28 100.0 33 ............................ TTAACTCTATCAAGTCCGCTAAATCACATGTTA 29834 28 100.0 33 ............................ TACACGTATGACGAAGTAGGCGACATGTTGCGG 29773 28 100.0 33 ............................ TTTCTGCTATGAATCCGGTTTGACCGACTAAAA 29712 28 100.0 33 ............................ TGATTGAGACGCTCAACAATGCTAAACATCTTT 29651 28 100.0 33 ............................ CAGAGTCTTACTTATCTCTTCAATCGATAGGCC 29590 28 100.0 33 ............................ TGTACAGAAATAGGGAAGCTCAGAAAATGATAG 29529 28 100.0 33 ............................ CACGGCAAAGACATATAAGAGCTGTATCAAGCG 29468 28 100.0 33 ............................ TGCTGTAAATGTCGTAGACCGTATCCTTGCACT 29407 28 100.0 34 ............................ TGAATAATCAATAGCCCCCGAAAACAAAAGGGGG 29345 28 96.4 32 ............T............... CAGCAGATTTAAAGAGCTTGATCTCTTTACCG 29285 28 100.0 33 ............................ TTTCGTTGCCACTAAAGTATCCAACTACAAATA 29224 28 100.0 33 ............................ TTACGATAGCTAGTTTATTACACGCTGGCAAGG 29163 28 100.0 33 ............................ TAACATTGGGCCGCTGGATTTACTTCGCTAATG 29102 28 96.4 33 A........................... CAATTGACTGCATGGCTTGACCACAGAATTAAG 29041 28 100.0 33 ............................ CTGAACTGAGCTGAACTGAACTGAGATGAAGAG 28980 28 100.0 33 ............................ CTTCGATCAACTACCTTATGAAGTCGACTAGGT 28919 28 100.0 33 ............................ TTAGTAATAAACCATGAACAGTTGTATGATACC 28858 28 100.0 33 ............................ TGAATAAAGTGATCAGTTCAGAACTAGTAAGGT 28797 28 100.0 33 ............................ TATAAGCATGTCCGTCAATTACAATGCTAACGG 28736 28 100.0 34 ............................ TTCAACATCTAACCACTGGTAACATTGCTCTATA 28674 28 100.0 33 ............................ TGTATCACACTTTCCAGCATATACTTAGGCAAG 28613 28 100.0 33 ............................ TCCAAGCTACTGCGTCCGCGATTGTTTGCGTAA 28552 28 100.0 33 ............................ CGACTGGATTAGCTACGAACTGACGCAAGAACG 28491 28 100.0 33 ............................ TCAGCAGGCCTACGGTGATCTCAGCGTCGATTT 28430 28 100.0 33 ............................ CTTACGGTAGATCAGACGATACTGACAGCCAGG 28369 28 96.4 33 ..................A......... TGTTCTTGCCCAGAATGATAAACTCCTGCCCGA 28308 28 100.0 150 ............................ TGGGGGGCGTAGTACACCCCACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACATGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 28130 28 78.6 0 ...........AT.T.C....A.....A | T [28123] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 52 28 99.4 35 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAACTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAAGGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGCATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCGAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGATAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAACATGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGAAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAAGCGAAGAAAGCATGGCGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGACGACAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCATCT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //