Array 1 634787-633318 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134163.1 Yersinia pseudotuberculosis strain NCTC10217 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 634786 28 100.0 32 ............................ CACTAATGATTGCATTCACCTTTTCTATTGCG 634726 28 100.0 32 ............................ ATATGCATGCGTGCCATCTTTTCATGCCACTC 634666 28 100.0 32 ............................ GCCAAATTGAAAATTACTAATCGGGTCTACTT 634606 28 100.0 32 ............................ AGGGACGGCCACTCTTTTTACGCGGCATCGAG 634546 28 100.0 32 ............................ ATTAAAAGCTGACCGGTAATCATATTTACAGG 634486 28 100.0 32 ............................ AACGACCATGACCGCAAGACATTAATCATTGA 634426 28 100.0 32 ............................ ATCTTCACTGAAGCTATAACGTATCCGTAGCA 634366 28 100.0 32 ............................ AATATTCGCCGGAACCTCACCACCAGCCACCC 634306 28 100.0 32 ............................ AGTTCAATGACGGCGGCAAATGGAATGAGCCT 634246 28 100.0 32 ............................ GGTATTCGAATCAAGGGAGAGAGTGAATGAGT 634186 28 100.0 32 ............................ TACCCAATGCATATTTCAACCCTTGTGAAAAC 634126 28 100.0 32 ............................ AGATGGATAATATTGAATCTTCATCATCTGCG 634066 28 100.0 32 ............................ ACTGAGGGGCGCAGCCGTGAGCCATTGCACCA 634006 28 100.0 32 ............................ AAATAGACAACTACGCAGCAGTGCTAGACCGC 633946 28 100.0 32 ............................ ACACGGGGCGGGAAAATTGGATATATTGATTC 633886 28 100.0 32 ............................ GCTAATGCTAATAAAGAAGTTGAGCAAATGCG 633826 28 100.0 32 ............................ AACCCACTTTTAAATGCAGAAGGTAATGCAGT 633766 28 100.0 32 ............................ TCATTATTGATTTCGATTGGCTCAAGCTCGGT 633706 28 100.0 33 ............................ GCGATAATATTTTCATTAAGTTTCGCTATCCGG 633645 28 100.0 32 ............................ ATCAACCACACCATCGGCTGTGTGATGCTTAA 633585 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 633525 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 633465 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 633405 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 633345 27 85.7 0 ...................A-.A.T... | C [633321] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3708715-3708863 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134163.1 Yersinia pseudotuberculosis strain NCTC10217 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3708715 28 100.0 33 ............................ ACTTTCGGAGACAGTGATTCTACGACCGATGCA 3708776 28 100.0 32 ............................ AAGCCAACGACGGATCTCTTCAACGGCAATGC 3708836 28 89.3 0 ...........T............T.G. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCCTTTAAACACCAGACAGCACAACAACCCAAGAGGTTAGTTACTGTCCGCGGACGGATAAGTCACAGTTTCCCCATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATCTATTAGGATATTTCAGACATTTATACAGGATATTTCTGATCTCCATCACAGGGGGACCTCATTAGATCACGTCAATATTCTTTTTTTAATTTACCTAATAACCTCATTTACTTAATAACCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGCGTCATTTTTACCCTTTGGCGAAAGAGTTATTTTATAAACAGTTTGTTACCCGTATTATCTTACT # Right flank : AGGGTTACTGTCTGTGCGCCAGCGCGGCCCCAGCCTGCGCCTCCTGCTGGTAGGCCAACGCCACGACCAGCGACTGCACTAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTAAGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCTAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCACGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4314762-4315391 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134163.1 Yersinia pseudotuberculosis strain NCTC10217 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4314762 28 100.0 33 ............................ CGAGCGGGTGATTGACTTGCTGATTGATGGCTA 4314823 28 100.0 32 ............................ GGCATGAAAGACCATGACATTTGCAGCAAGTT 4314883 28 100.0 32 ............................ AAGAAATATAGATGGCAAGCGGATTGCGCAAG 4314943 28 100.0 32 ............................ AACAACAGCTACGCTCCATTAACTCTGTATGT 4315003 28 100.0 32 ............................ GGTTGCCACAAAGTATTCAACCAGCCATTTTA 4315063 28 100.0 32 ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 4315123 28 100.0 32 ............................ ATTTCCGCCAGATTCCATAGCGCTATTACTAA 4315183 28 100.0 33 ............................ CAAACGGATTACAAAAATGGGGTGTATTTAGCA 4315244 28 100.0 32 ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 4315304 28 100.0 32 ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 4315364 27 89.3 0 .....................CC.-... | T [4315390] ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //