Array 1 20940-18163 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWQ01000054.1 Salmonella enterica subsp. enterica serovar Elizabethville strain BCW_2872 NODE_54_length_26066_cov_3.69414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20939 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 20878 29 100.0 32 ............................. GACGCCAATTATACATTGGCTGTATATGAATT 20817 29 100.0 32 ............................. CTGAGTCAAGTGCGCGAGTCCAGGCTGAGAAA 20756 29 100.0 32 ............................. TTGAGCATGTTAACTCTTTGCTGGCTCTTACA 20695 29 100.0 32 ............................. GGGCAAATGGTCTGTATGCCCAAAAGGGGCAG 20634 29 100.0 32 ............................. CCGCGATCCGCGCCGCTGACATTGGCGTGAAG 20573 29 100.0 32 ............................. AGGAGGGGCAGTTTCAGGCGACGCTGAGCACC 20512 29 100.0 32 ............................. CGTAACGGTGATAATGTGTTGTTTGAAAAGGA 20451 29 100.0 32 ............................. CCCAGCCCTATACGAGCTCTCCTGCAATTGCT 20390 29 100.0 32 ............................. GCAGTTCGGAGACCAGGAACATACCGCCGCAC 20329 29 100.0 32 ............................. CTATCGCAGCACTAACACCAGAACCAAAAACA 20268 29 100.0 32 ............................. CCGTTGGGTTCACTCACCTCTACTGCCAGCGC 20207 29 100.0 32 ............................. CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 20146 29 100.0 32 ............................. CCGAGAGCAGAATTGCTCCGGGTTGCCATCGC 20085 29 100.0 32 ............................. GAGATATCCCACGTTGAGGATATTCTGGCCGC 20024 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 19963 29 100.0 33 ............................. CTCTATCCACAACTCATCATATGCAGCGTCGGC 19901 29 100.0 32 ............................. GGGGAGATCTGGAAAGAAGAGGCCGAACCGAA 19840 29 100.0 32 ............................. ACGACTCAATCGCCGTCATCAATAGTAATGTC 19779 29 100.0 32 ............................. GCAATGCTGGTGGAACTCTACCGACAGCATAA 19718 29 100.0 32 ............................. TGAAGAAAGAAAATGATGCCATTTTAAAAGGT 19657 29 96.6 33 ............................T GGCTGGGTTGGCTGTGAATATAAACCACTGACT 19595 29 100.0 32 ............................. CTTTATGAGTCGGCAGCGACACCTAAAGAGCA 19534 29 100.0 32 ............................. CGTGCATTCTGTAGCCATCTAACTCTGATTTA 19473 29 100.0 32 ............................. GGACTCCGTTAACGTTGCGTGGGACGACTATA 19412 29 100.0 32 ............................. CGATTTGGTTCTCGTTTAGCTCCTGTTTGTCC 19351 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 19290 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 19229 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 19168 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 19107 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 19046 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 18985 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 18924 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 18863 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 18802 29 100.0 32 ............................. TTAATACTCTCCAAACATTACGCAATCAGGCC 18741 29 100.0 32 ............................. GTCCGCCTGAATTGACTATAACCGAATCACAA 18680 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGGC 18619 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 18558 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 18497 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 18436 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 18375 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18314 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 18253 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 18192 29 96.6 0 A............................ | A [18165] ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATACCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATCACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACCGGGGCCGGAAAAACAGAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAACACCTGGCTGGCGCTGTATCAGCCGGACTCCCGTCCCAGCCTTATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCTGGTACGGAAGAACCCGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5416-3554 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWQ01000005.1 Salmonella enterica subsp. enterica serovar Elizabethville strain BCW_2872 NODE_5_length_57378_cov_3.9312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5415 29 100.0 32 ............................. GTGAGCACGGGGCCGAAGTATATTGCGGCGCA 5354 29 100.0 32 ............................. GACAGCATCAACACGCAGATTAGCCAGCTTGA 5293 29 100.0 32 ............................. ACAATACACTGAAACTGGCCAGCGACATGGAA 5232 29 100.0 32 ............................. TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 5171 29 100.0 32 ............................. GGCGCGGGAAATGGGTTTTAAATATTATCGCT 5110 29 100.0 32 ............................. GCATTAATTGGGACGGGTTTATTGCCTCGCGA 5049 29 100.0 32 ............................. GCGGGCGTAGGTGAGGCCCCGGCTACAGATAA 4988 29 100.0 32 ............................. GTGGCAATTTCAATTGCACACCCGGAATTAGC 4927 29 100.0 32 ............................. TCAGACTCCGGTCAGAATTGCATAGTCGTCAG 4866 29 100.0 32 ............................. GCATAACCCAATTCACCGAGGAACGCCTGCAC 4805 29 100.0 32 ............................. CTGTCGGGCCTTCGCGCAGCAGTGAGAACATA 4744 29 100.0 32 ............................. CCTTGAGTGACTGCTTGATGCTGCGACCGTCT 4683 29 100.0 32 ............................. CCAGCATCAGGCAATCAACCATCACCAGAAAA 4622 29 100.0 32 ............................. ACGACATCGCGCAGGCTATCTGGACGGCGGCA 4561 29 100.0 32 ............................. AGGCCTGATTATTCACTGCCTGCCAGTGTTTT 4500 29 100.0 34 ............................. GGGTGTTTTGGAAAAGTTCGGGCCAAATCTCGGG 4437 29 100.0 32 ............................. TCCATTGCCCGCGAGATGCCGGTTACGCAGGA 4376 29 100.0 32 ............................. ATGGCTGGTTCGCTTGCTGCATCCGGTATGCA 4315 29 100.0 32 ............................. CGTGTTCTCGGCGAGTGGTTTTTTACGTCCAA 4254 29 100.0 32 ............................. TTAACAACTGCCGCGCAGATGATCGGGAAATT 4193 29 100.0 32 ............................. CCACCACCGCCGACCTTAATTTCGAAGTTGCG 4132 29 100.0 32 ............................. AGGCCTGATTATTCACTGCCTGCCAGTGTTTT 4071 29 100.0 34 ............................. GGGTGTTTTGGAAAAGTTCGGGCCAAATCTCGGG 4008 29 100.0 32 ............................. TCCATTGCCCGCGAGATGCCGGTTACGCAGGA 3947 29 100.0 32 ............................. ATGGCTGGTTCGCTTGCTGCATCCGGTATGCA 3886 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 3825 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 3764 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 3703 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 3642 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 3581 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================== ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTGGC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //