Array 1 22886-25389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLS010000001.1 Sporosarcina luteola strain S00266 Ga0436341_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 22886 32 100.0 36 ................................ GTTTATTCAAGACAATCATTTGCGCAACCTCTATGA 22954 32 100.0 36 ................................ ATTGCTTATAGTATACTTATCTTATGTTGTAATTTA 23022 32 100.0 34 ................................ AGCAGGATAGAAGCCTTTAATTTCTCCCCTCTCG 23088 32 100.0 35 ................................ TGCAGTATCAATGTTCTGCGGCGCATTGCGTATCA 23155 32 100.0 34 ................................ CAAGTGGAAAAGAAGGAACAAGCCGAAGGCGAGT 23221 32 100.0 35 ................................ TCCACCCAAAATGACCTTATCACCACGAACAAAAG 23288 32 100.0 35 ................................ TGGCGACTTTTTAATTGGCCAGTATTGCGGCTATA 23355 32 100.0 34 ................................ ATCAGTAAGCCTATTTAATGCCGCAAGCTCTCCC 23421 32 100.0 35 ................................ TCTGTCGGCTGAACAGCCTGCAAAAACTCCTGTGG 23488 32 100.0 35 ................................ ATACAACGGAGGATACTTGACCATTTCCGTTTTGT 23555 32 100.0 34 ................................ AAAGTATTGGCACTTAGGTTTTTAGTGATTACAT 23621 32 100.0 35 ................................ CTTAGACAAGCCGTGATTGTTATCTAGCCATTCAC 23688 32 100.0 35 ................................ GTTTTTGCCAAGAACCCACTTGTATTGCTGGTTTA 23755 32 100.0 35 ................................ TGAACATCATCACCATGCACATATAGACTGTAAGT 23822 32 100.0 35 ................................ TTTGTGGGATTGATAACAACCGTTCACGCCTTTTG 23889 32 100.0 34 ................................ CGATGGCCCATTAAAGTCCTGCAATTGCAGTTTA 23955 32 100.0 35 ................................ GTTCCGGCTTCATTAGTCCAGTCACCTTTTATGCC 24022 32 100.0 36 ................................ ACCATTGACGGTCAGCCCCTCAACCTACGCAAAGTC 24090 32 100.0 35 ................................ CTGCTTTGGCTTTGAAAGCTCCGCAAGCAATGCGT 24157 32 100.0 35 ................................ GTCAGATATACGTTGTAATCATGAGCCTTTATTGT 24224 32 100.0 34 ................................ CAAAAATCTGATGTAGGTACATCGGATTTCTTTG 24290 32 100.0 34 ................................ CATGTAAGCATTAGTAAGATTACCACTCACTTCC 24356 32 100.0 36 ................................ TGAATCGTGAAGGTGAATTTCTCTCCCTGGATCTTC 24424 32 100.0 35 ................................ GTTTCAGTTGTTACAGGATTTACTTCTGGATTGAA 24491 32 100.0 34 ................................ ATCGAGTTTGGGGGTGGGGAGGAATGAAGTTTCA 24557 32 100.0 34 ................................ AAATATGTGTGAGGTGTACTAGATGGCTATTTTA 24623 32 100.0 36 ................................ CCCAATGGAATGAAGGCACAATTTGGCACTAATTTA 24691 32 100.0 34 ................................ CACGTTTCTAGTGGACGATTGCGCCAATCTTTCG 24757 32 100.0 34 ................................ CTTATGATGATTTCAAATTGAATTGCGACCAGGT 24823 32 100.0 34 ................................ ATACAGGAAAGGCTTTCCAGGCTCATTTAATTGA 24889 32 100.0 36 ................................ AGATAGTACCCGATATTACTTGCCCTGACCGTACTA 24957 32 100.0 35 ................................ AAACCAGATACGATGCTTTCTTATCTAGGTTCGAA 25024 32 100.0 35 ................................ CTTTATAACATTATCACGGAGCCGAATTTGAAAGA 25091 32 100.0 36 ................................ TTCTGCATCCGTCAACTCCAAACCGTACTCTCCTAA 25159 32 100.0 34 ................................ CCAATACTCCCAAGTATTTTGATTGTCGACGTAA 25225 32 100.0 34 ................................ AGCATACGGATTGGCTCGATCTTTTCCGGCTTGC 25291 32 100.0 35 ................................ TTTTTCATGCGTAGCTACTACTTTCAAACTCCCTT 25358 32 96.9 0 ....................A........... | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.9 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CTTGACGCATACCCACCATTTTTATGGAAGTAGGTGTTTTCCATCCTAGTATTGATTACGTATGATGTAAGTATAACGTCAGAAGGTGGAAAAAGAAGGCTTAGGCGAGTAGCGAAAAAATGTGAAGATTTTGGGGTTCGAGTCCAAAATTCAGTATTCGAATGTGTCGTGGATGCGACGCAACTCAAGATATTGGAGCTCGAATTAGAAAAATTAATTGATCCAGAAGTGGATAGTCTACGATTTTATAGGTTAGGAAATAATTACAAATCGAAAGTAAAACATATAGGTACTAAGCAAAGTTTAAACGTTGAGGAGCCATTGATTTTTTAGTGCGAACCTGAAGTGCCCATGAAATCTTTGGGAGATCCGCACCAAAAAAAGAGACGAAAAAGCGTGAAATTTTGACAGGACGTTAGGTTCTACTATGAATAAATAGCTCCTTGGCTAATTTTTATTGTAAATATAGCGGAAATTACCTTTTTAACCTCGTTTTCGCT # Right flank : TTTTTGTATCCGGTGATCCTCATGCCAGCCTGTTATAATCGGACTCTTCATGAGTAAGTGAACCCTAATTGATCCGTTTGGAATAGATGAGACATGTATTATATTTCAAAACCCTAATTATTCACCAACTAATAGAGAATCCCGTTCAAAAGCGATCGCCACGGCTTTTGAACGGGATTCTCTTTTTCACTTAAAAGATGAAAAAAGAATCCGTTTCTGATAGGATGATTGCGACCAAACAAAACATCACAGAAAGGATTCTTATGATACCTACTTAAACCACTCTACATTCAACCGTTCCATTAAGTTATCCAATGATGGAGGCGAACTTTCCTCCGACACCGGCAATCTCATCTTCCGTGAGCTCGATGAAAAATTGGGGTTCTTCCAAACTATCGCAGATCAGCTTCAACTATCCGATGAACGCACGTTTTGCCTCTATGAAAATGACGAGCTCCTTCAGCAGAAGATCTATCAACTCATCGCTGGTTATCACCAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 486883-485431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLS010000001.1 Sporosarcina luteola strain S00266 Ga0436341_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 486882 33 100.0 34 ................................. AATTCAAATTGTTTTGCTTTGTTTCCATCTGCAA 486815 33 100.0 34 ................................. ATAATCTCACCACCTTTTATGTAATAGAAAAAGA 486748 33 100.0 33 ................................. GGTAGAAAGCAAGCGTTAACTGAGGCAATCTTG 486682 33 100.0 34 ................................. CAGAGGTACATCGTCCAACGGTACGTCAGATACA 486615 33 100.0 35 ................................. TACACCTCAATTTTCATTCGATTATTTTATTGGCC 486547 33 100.0 34 ................................. GATTAATTTATGACTTGCCACATCCTCAAAAGTA 486480 33 100.0 34 ................................. TCCCCGCACGGTACTCACTATGAGGGCACGGTCG 486413 33 100.0 36 ................................. TTCATCAGATTTAGGTAGTTCTTTATACCAGCGCCG 486344 33 100.0 34 ................................. GGGGAAAGTGCGCAAGAAAAAGGATTCATTGTTA 486277 33 100.0 35 ................................. TCAGACGAACAGAGGAGCCTTAGAAAAGAAGATTG 486209 33 100.0 35 ................................. ATCCAGCTCCTCCATCGGTTTTAGCATTGATCGAT 486141 33 100.0 37 ................................. AATAATTTAGATGTGGATAGCTTGGCCCGTTATTTAG 486071 33 100.0 33 ................................. TATTGACAACCAAGCGAATATACCAAGAAAAAT 486005 33 97.0 34 ...................C............. AAATCTGAGGAACTCAGCTTTGAACCTATCAAAA 485938 33 97.0 34 ...T............................. TTCACAAAATCTCGCCGCTCTTTGAGTACGTAGT 485871 33 100.0 34 ................................. TCATCTTTTAGTGGCCGTCCGCACCGCCTGCATG 485804 33 100.0 34 ................................. ATACAACATGCTCACCTGCCTTTTGTGGTGCATT 485737 33 100.0 34 ................................. AACATGACCGCCGCCCTCTATTTCCGGCTTAGGT 485670 33 93.9 37 A..C............................. TAATGATCGAGATTAAAACGCTGGCAACAGGCAGCAC 485600 33 97.0 35 .....................A........... TGCTGTAACGTTTTCTTCCGCTTTGGAACCCGCTC 485532 33 97.0 35 ...................A............. ACATCATTGGGGCCAATTGCAACAACAATCGTAAT 485464 33 93.9 0 ..............A.....T............ | T [485435] ========== ====== ====== ====== ================================= ===================================== ================== 22 33 98.9 35 GTCGCTCTCTGTATGGAGAGCGTGGATTGAAAT # Left flank : GCTGGCCTCGCCTGCCAAGGCTAACATGTCTGCCACTCCACGTAAAATCTGCTGAGCAGTCAGCGAAGTGGTTACACATACTTTTTGACAGTACCGGATGTGACATGGGTATGCGCGGATATACCAGGGTTATGCGCGAATTTTTTGATTTATGCGCGCCAAAAGGTTCTTTATGCGTGGATACATCTTCGAGATGATATTAAATAGTTTTGGTAAAGTCAAAATTGAAAAGGAGTGCTGTTGGAGAATTGAGTTGGGCTTATTGATCGCTAACAAAATATGTTGTGTTCAGCATACGGTCTTTTATTAACGAAGTGTTGTGATATTATGGTAGTAATACGCGAACCTGAAGTGCACATGAAAACCTGGGGAGGTTCGCGCATAAAAAGCTCGATAAATTCCATTTACTGTTAATGAATGATCGGATGACTTAAAGATTTTATAAGCTAAACGCAATATGTAGTAACAGTGATTTTATAATTACTAAATATAGC # Right flank : AGCATAAGAAGAAGCTTCGGAATTGAATGCCATGATGCTCTCTTTATAGAAACCTTTGTTTTAAATATTCAAATTCCGAAACGTTACTCGATAAAAAAAGATTTTCATGAGTAGCTGCATATGGCTGGTTGCGATCTATTCATAGGCACAAACCCCATTCCAACAAAGTAAAAAACTCCGGGATACCATCCACGGAGTTTTTCCACTTTGCTTTATTGTACTGCAATATTCAACCCGGATAATGGAGCTTGGTTGCGGCCCGACGTATCCGAAACTTTCACTGCGGATAAAGCTGCATCATACAGATCGATTGCCTTTAAGATCGAACCTTTTGTAAAGTTGGAAGCTGCTGGATCGGCTAAGGAAAGCACCAGTTCATTAGCTTGGGCAACTGTTGCAGTTGTTCCAGCCAGCGTTCCAGAAGTTCCTTCATTTACAAATCCAATATTGAAGCTGCTGACACTGGAAGACAAGTCAATGTTGCTTCCAAATGTTAACGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTGTATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //