Array 1 40754-44142 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBDY01000002.1 Ligilactobacillus salivarius strain NCIMB8817 NCIMB8817_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40754 36 100.0 30 .................................... CCCTCAGATTTTGCGCCAAAATAGGGGCAT 40820 36 100.0 30 .................................... AATATAATTGGGACGGTATTACTCCAGTTA 40886 36 100.0 30 .................................... TGGACAGAAGATTGTAATTCCTACTATTTG 40952 36 100.0 30 .................................... TGGGACAAAGATTATGCTCAAATAGTGGAA 41018 36 100.0 30 .................................... GAATTGTGTCACCTTCTGTGTCACCATTTT 41084 36 100.0 30 .................................... ACAAAGTTACAAAGATAGTTCTGACGTGGT 41150 36 100.0 30 .................................... GATACTATGAATCGTATATCTTCGTGGCAA 41216 36 100.0 30 .................................... TTGGCAATAAATTTGCTTGGTTGCTGCGTA 41282 36 100.0 30 .................................... CTGCCATGTAGACACGACCGTATGCAGTGA 41348 36 100.0 30 .................................... TAGATCGACATATGATACTTGTAGCTGTAA 41414 36 100.0 30 .................................... ATCGTGTTTTAGAAGCTCAAACTAATCATA 41480 36 100.0 30 .................................... AGAGTAAGGTAGAGCGTTCTAATCGATTAG 41546 36 100.0 30 .................................... CTTTTTTTATAAAAATAGCTTTACAAAGTA 41612 36 100.0 30 .................................... TGCATGTTAAACCATCTGGGTATGTTACTT 41678 36 100.0 30 .................................... GACTCATCTGGTTGATTGTTAATCTTGTGA 41744 36 100.0 30 .................................... TGAAAAAACAAGTTTAGATGCATCTGTTTT 41810 36 100.0 30 .................................... CTGAAGTTGCTACAGCTTTAATCTATGCTA 41876 36 100.0 30 .................................... TATGTCTTAAACCATGAACTGTTACATGGT 41942 36 100.0 30 .................................... TAATATAACTACTACTACTACTGGACCAAC 42008 36 100.0 30 .................................... CCTCGCCTACCCAGTTTTTAATGTTGTTAA 42074 36 100.0 30 .................................... AAACAAACGCAAGCGTATCATAGGTTAGAT 42140 36 100.0 30 .................................... CGTATAGAAAACATTGAAGTAAGTAATCAT 42206 36 100.0 30 .................................... TCAAGTGCTAAATCAAATGGAAAAGAAATT 42272 36 100.0 30 .................................... ATTATTTTTTTATTCTTCTTGAGTTCTAGC 42338 36 100.0 30 .................................... ATACTGATGAAGGTTATAAAAAAGGCACAA 42404 36 100.0 30 .................................... GCTCGTATGGTGCAAAATTTCCTGAACAGT 42470 36 100.0 30 .................................... TAGGAGCTTAAAACCGTATGCAGTGATTAA 42536 36 100.0 30 .................................... AGTTAGTGACGGTGTTCCTGCTGAAGATCA 42602 36 100.0 30 .................................... AAGTCTTATCTTACATTGAACTAACCACGT 42668 36 100.0 30 .................................... ATACAGAGGCGATAGGTTCTTTAAGCAAAG 42734 36 100.0 30 .................................... CAAACTTTACAATTAACTCACTTTCACAAG 42800 36 100.0 30 .................................... CCTAATCATTAATTTACCGTCCTTTGTGGA 42866 36 100.0 30 .................................... TCCACACTCAACTATTCCGAATGATGATTT 42932 36 100.0 30 .................................... ATATCGTAAATCATTAGAATTAATGGAACA 42998 36 100.0 30 .................................... TTGTAAGTCTGTAGATAAAATGATTGAACT 43064 36 100.0 30 .................................... GAGTCTGATAGTCTCTTGCAATTAATTATT 43130 36 100.0 30 .................................... ACCACTTAATGCCGTCCCAAGTGTCTAATA 43196 36 100.0 30 .................................... CGTTGTAGCGTTTCTATATCGTCCAGACGA 43262 36 100.0 30 .................................... CGCATTATCTAAGTTTCCAGACGATTTCCG 43328 36 100.0 30 .................................... GGACAATCAAGAAAACGTTGAAACGGTTGA 43394 36 100.0 30 .................................... ATTGGCAGTATCTCAGTTATTACGTGTTGT 43460 36 100.0 30 .................................... AATGGTTGAGATGCAAGGAAGAACAAAATA 43526 36 100.0 30 .................................... TTAGACATAAGGTTATCTTTGCCAATGTGT 43592 36 100.0 30 .................................... TCTTCTTACGCTCGTTATCTGCAGCCCAAC 43658 36 100.0 30 .................................... TTCAGAAACTAGATTACATCAATACGAAAC 43724 36 100.0 30 .................................... TGATAGTTTCGATAGACAACAAGCAAATTT 43790 36 100.0 30 .................................... TAAGTAGAATAAAGAATAGTAAGACGTAAT 43856 36 100.0 30 .................................... CATCAACGAAGATATGGTACATGGTCAAGT 43922 36 91.7 30 ....................T....GA......... TACTTTCTTTTATGATATAATTTAAACATA 43988 36 72.2 15 .............A.......TT.AGA...TG..AA AACACAGGAGGATTA TA [44007] Deletion [44039] 44041 36 91.7 30 ..........A.............A..........T GATCTACGTTACATTTTCTTAATGTTCACA 44107 36 83.3 0 ..........A.........T...AG...C...G.. | ========== ====== ====== ====== ==================================== ============================== ================== 52 36 98.8 30 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGGTTTTGTATAAAATTGATATACCCTTACAAGCAGATTATGACAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGCGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCATAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGGGTTTAAGATATATTATGGTTGATAATATAATATTATATGGTATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGCAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGTGACTATAAAGTTAGTTTGGATTCAATTTTCGAAAAAAATAGAGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //