Array 1 677-2428 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAK01000066.1 Neisseria meningitidis strain NmCRJ2 NmCRJ2_scaffold_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 677 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 743 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 809 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 875 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 941 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 1007 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1073 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 1139 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 1205 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1271 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1337 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1403 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1469 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1535 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1601 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1667 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 1733 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 1799 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 1865 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 1931 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 1997 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 2063 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 2129 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 2195 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2261 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2327 36 100.0 30 .................................... CAACGCTTTTAACATATTTGCCTTTGATGT 2393 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //