Array 1 667507-669674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUJ010000001.1 Streptococcus thermophilus strain 24737 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 667507 36 100.0 30 .................................... CTAGGCAATCTTGAATATAACGATATCAAG 667573 36 100.0 30 .................................... GGAAAGGTAGTGATGGACGAGATGGTATTC 667639 36 100.0 30 .................................... ATAATCACGATGACATCATAGGAGGGATTG 667705 36 100.0 30 .................................... TCCTTTTTTGAAACGGTAAACTCAAACGTA 667771 36 100.0 30 .................................... GATATCTATGTGGAACTTATAACCGCTAAG 667837 36 100.0 51 .................................... ACTATTTGGCAACTGTACAACGAGGCTTCACTTGCTAACGAGTTCGTCTTT 667924 36 100.0 30 .................................... AATTTGTGAGCTCTGGTTTTAGAGTAATTT 667990 36 100.0 30 .................................... AGCATCTGTGAACTTGATGTCTGGCAATTT 668056 36 100.0 30 .................................... TCTCATAATCACCAATGCCGTCAACGTTGT 668122 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTCAGAACACA 668188 36 100.0 30 .................................... ACTACTGCAGATTTTGAATATCTTACTCGT 668254 36 100.0 30 .................................... GGAAGTCATGGTTAATAATTGGGAATTGTT 668320 36 100.0 30 .................................... GGTAGAGATTTTGTCTTGGCGAGTGTGCCT 668386 36 100.0 30 .................................... CGAATCAGAAAACATATGGATGCATCTCGT 668452 36 100.0 30 .................................... GTGGAATAGATGAATAGACTTAAAGAGTTA 668518 36 100.0 30 .................................... AAACTTACTAGTTGAGAACGCAACCCCTCC 668584 36 100.0 30 .................................... GCAATTTATTCGCTTGATGTACTCACGCTT 668650 36 100.0 30 .................................... GTTTTCAATCAGATTGGTTTATTGAACAGG 668716 36 100.0 30 .................................... AGTCACCTCAAATCTTAAAATTGGGCTGAA 668782 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 668848 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 668913 36 100.0 30 .................................... TCACATGTAGGCAAATATACCGACGAGGTA 668979 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 669044 36 100.0 29 .................................... TAATTTCAATATCTTTGAACACTATCAGG 669109 36 100.0 30 .................................... ATCATGACCCCAACGTGGCCACCTGCACCA 669175 36 100.0 31 .................................... TTGGCGTCGTCAGTGCTCGCAGTTGATTGAA 669242 36 100.0 30 .................................... TAGTCGTGGTGACAGAATTAGACCGTTTAG 669308 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 669375 36 100.0 30 .................................... GAAGATGGTGATGCAGATGTGCTCTCTGAA 669441 36 100.0 30 .................................... GGCAGCATCAAATGATGGTTTTGTCATCGG 669507 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 669573 36 100.0 30 .................................... AGCTCTCGTCCAAAGAATGGACCATCTTAA 669639 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =================================================== ================== 33 36 99.8 31 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 908693-909819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUJ010000001.1 Streptococcus thermophilus strain 24737 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 908693 36 100.0 36 .................................... GCTATCTGGATTTTCTTCCTTGAATTTTTCAAACCA 908765 36 100.0 39 .................................... ACTTACATATTCCAAAATTAGCTCTTTGATGTCATTATT 908840 36 100.0 35 .................................... TGTATTTTCATTTACTTTATAGCTAAAGTGTTTAA 908911 36 100.0 37 .................................... TAACTGCTGTCTTATCTAGAGGATATTCTCTTAAAAC 908984 36 100.0 37 .................................... ATCTTTGTTCAATTTATTGTAAATATTCGACATTTTA 909057 36 100.0 39 .................................... TCATAAGCTGTTGTTTTTTAAATTGATCGTAATAAGTAT 909132 36 100.0 38 .................................... TCATGATATTTATTATCTGCCGAATGATTTGATAAGCG 909206 36 100.0 36 .................................... GCGAATTCTTCTTGTGTCAGGTTATGACGTGCTCGA 909278 36 100.0 36 .................................... AGACATATAGCTTTTGTCAGCATAATAATTATCATC 909350 36 100.0 34 .................................... TGGTAGCGTATGTTCTAACTGGCATTATTATTTC 909420 36 100.0 40 .................................... GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 909496 36 97.2 35 ......A............................. TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 909567 36 97.2 37 ......A............................. ATATTTGCAACTCGATTTTCAGCTACTCCGGCAATAG 909640 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 909714 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 909784 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 97.9 37 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1385716-1384360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUJ010000001.1 Streptococcus thermophilus strain 24737 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1385715 36 100.0 31 .................................... CAAATTTGTCAAAATCAAAGTTAATTTTTCC 1385648 36 100.0 30 .................................... GATTCAGTGGATGCGTATTACCGAGGAGGT 1385582 36 100.0 30 .................................... CCATCTTAACGAGAACATTGGAGAGTTAAA 1385516 36 100.0 30 .................................... AACAGCAATTAACACAGTATATACAGAACT 1385450 36 100.0 30 .................................... AACCTTTCAGAAAGAGCTCATGTAGCTATC 1385384 36 100.0 30 .................................... TAAAGAAGACATTCAAGTTAATTATGAAAA 1385318 36 100.0 30 .................................... TATTGACCGCTTCGATGTTGTTCAAACAGA 1385252 36 100.0 30 .................................... TTTTTAACTGTGAAGGAATTAAAGTGGAAG 1385186 36 100.0 29 .................................... ATGGCCTATGCTTAATAAAATATCTTAAA 1385121 36 100.0 30 .................................... GCTATACCCTAATATAGCTGAACACGTCAA 1385055 36 100.0 30 .................................... AGTGAAATTTAACGAAGTAATGCACAAAGT 1384989 36 100.0 30 .................................... TTAGAAAGTGTTTTACTTGCGAGACTAGAT 1384923 36 100.0 30 .................................... TCATAGAGTGGAAAACTAGAAACAGATTCA 1384857 36 100.0 30 .................................... AAGTCGTGTCAGAAAGATTGCTGACCGTTT 1384791 36 100.0 30 .................................... AGATAAATTGCCAGACATGAGACGTTATTT 1384725 36 100.0 30 .................................... CCTTAAGCGTGCCCGTGGTTTCACAGCTTT 1384659 36 100.0 30 .................................... TGATTTTATATACCGAAAAGACTACGTCTT 1384593 36 100.0 30 .................................... CACTTTCTTTATCACGACCTAGATTATCTT 1384527 36 100.0 30 .................................... TCAAAGCCTTGTCTGATCACACGAAAAAGA 1384461 36 100.0 30 .................................... CCATTTCTATGGAGTTTACGGTGACGTCGT 1384395 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : ATTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //