Array 1 487379-489630 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043473.1 Chromobacterium paludis strain IIBBL 257-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 487379 28 100.0 32 ............................ GTTACGAGCGGCTGGCGGGGTCCGACGAACAC 487439 28 100.0 32 ............................ GCATATTCAATCAGACGGCCAACGCACTGAAC 487499 28 100.0 32 ............................ ATGCTGCCTCCTAGTTCGATTGAATAGCGATA 487559 28 100.0 32 ............................ TCAAATCCGTTCGCCGTAAATCCGATGGCCAA 487619 28 100.0 32 ............................ TGATGGCGACGCCGACGCAGGTTCGCATAATC 487679 28 100.0 32 ............................ TGTCTATTTCGGCCTACACAAACGGTCAGCAA 487739 28 100.0 32 ............................ ATGTAGAACGTGCTACCGGCCCCGGTACCGCC 487799 28 100.0 32 ............................ TGCTGAAACGCGATAAACGCAGTCACGAGCGC 487859 28 100.0 32 ............................ TACCGGCTATGATCTGGATGCACTTGGAAAGG 487919 28 100.0 32 ............................ ACATGAATAAACAGGTTTCCGGTATGTACGAG 487979 28 100.0 32 ............................ GCTCCAACACCGACAACGTGGGCGATTGCAAA 488039 28 100.0 32 ............................ TTCATCCTCGTTCACTTTGGCGGCCACCCAAG 488099 28 100.0 33 ............................ AGAGAAGCCAGCGTTTGGCGCGGAGCTGATTAA 488160 28 100.0 33 ............................ TGATTGTGCGCCGTCCTGTCTCTCTGCATTGAT 488221 28 100.0 32 ............................ GTGATTCTGGCTTGCGCTACCTTGGAGATATC 488281 28 100.0 32 ............................ GCCGAAAAGCGCGGCGAATATGTCTATACCAT 488341 28 100.0 32 ............................ ACATCGCGGGTTGCTAATGCGACTGGTGTTTC 488401 28 100.0 32 ............................ AACAGGCAAACACTCCATGAAACGCTGCAAAC 488461 28 100.0 33 ............................ CTGGACAGCATGCTGTTCACGCCCAACCTGCGC 488522 28 100.0 32 ............................ TCGATCCGGGCCCGCATGCTGCGCCCTGCTAC 488582 28 100.0 32 ............................ TTGATCGACAGCGGCCCGGAGCGCTCGAACAT 488642 28 100.0 32 ............................ GCGAACAGTGTTCCAACGGCCCCGTTTGAACA 488702 28 100.0 32 ............................ ATAACGGCAATCTGTTTAGCCCGTTTTATACC 488762 28 100.0 32 ............................ GTTACATAACCGTTTTTCGCAGCAGCAACGCA 488822 28 100.0 32 ............................ AGTCGCCATGCGCATGATGACCAACCAGTTCC 488882 28 100.0 32 ............................ TGCACCAATGGCACCTTGTGCAGCGGTGAAAT 488942 28 100.0 32 ............................ AAACAAACGCCAGGCGGCGATACAGGCGATGC 489002 28 100.0 32 ............................ TTTTTGCGCTATCGGCCTGACCGCAGGGAAGT 489062 28 100.0 32 ............................ ATAGACATCGTCATTGCCGGCGCGGCGAAGGC 489122 28 100.0 33 ............................ CATATGCCAGGCATCCGGCGGCCGTAGGTTTCA 489183 28 100.0 32 ............................ ATGTGCGAAACATGGGGGCTACGCTTGCGCGC 489243 28 100.0 32 ............................ TCGTCAGTTGCATCAATGTCAGCCAAGTCAAC 489303 28 100.0 32 ............................ TATGGCTGGGATGCCATTACAGCGATTACCAT 489363 28 100.0 32 ............................ ACTTCCCGGCCACGGATTTCAGCAAGGAAGGC 489423 28 100.0 32 ............................ GACGTGCCAACCCAGCCGACCGCGGTTCGCCC 489483 28 100.0 32 ............................ ACCATCTCGGTGTAGAGACGCAACCAAGGCAA 489543 28 96.4 32 .........T.................. TGCCGGCTGGAATAGAGACCCATCAACCGGTA 489603 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.9 32 GTTCACTGCCGGACAGGCAGCTCAGAAA # Left flank : ATGCGCGACCACGTTACGCTGGGCAATATTCAGCCGGTTCCTGCCAATGCCAGCCCCATCCGCGTACAGCGCAAACAGGCCAAGAGCAACCCGGCCAAAGAGCGCGAACGGCTGATGCGGCGCAAAGGCATGAGCGAGGCCGAAGCGCTGCGGCTGATTCCCGACGACAAGGCCAAGCTGCTGAACCTGCCCTTCATCACCCTGAGCAGTCAAAGCACCGGCCAGCATCAATTCCGCCTGTTCATCGCCCAGACGGCAGCCACGGCAGAGGTTAAAGGCGATTTCAACGCCTACGGCCTGAGCCGCCACGCCACCCTGCCAGGGTTTTAAAGCGTAAAGGGTTGCAACCAAGCGCATTGAATTGGCGGCAACCCTTTTTTTGACAGAAAAAAAGAATCTTTTAAAATCAGCGATTTACGAAATTGGTCGAGAAAAGGGTTTTTTCATGAAAGATCCCCACCTCCCTTGCTTGGCTTGGTTGGGAAGGGAAGTAGGCTCTA # Right flank : AATGACAAAAGTGGACACGAGTTCGCCCAGGGCAATCGCACCTTCTTGTCATAAGCAAACAGACTTGCCAACCCACCCAGACTTGAGGTGAACTCCCAGGTTTTACCGGTGCGGGATGGGAACGTTGATGGAACATTTGGCCGAGGTGCCCGAGCCGAGGACCGGGCGCTACATCGCCCATCCGCTGGACGAAATTCTGGTGATTGCCGTGTGCGCCATCTTCGCGGGGGCGGAGAGCTTTGTGGAGGCGGTCGAGTGGGCTGAGGTTAAGGAAGCTTGGCTGCGGCGCTTCCTGCCGTTGAAGAATGGCATTCCTTCTCACGATACCGTCAACCGCGTGTTCCGACTGCTGGATCCCAAGCAGTTCGAGAACGCCTTCCGCAGCTGGACGCAAGGACTGCTGGGCTCGTTCCAGCAGATCGCCATCGATGGCAAATGCCTGCGCGGCACCGCTCGCGGCGCGCACAGCCCGGTGCACATGGTCAGCGCCTTCGCCACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 490871-494069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043473.1 Chromobacterium paludis strain IIBBL 257-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 490871 28 100.0 32 ............................ ACATGGAGCAAAGCTTTGCGCGGTACATGGCC 490931 28 100.0 32 ............................ ATGAAGATGAACCAGGGGAAGACGTTTTCCCG 490991 28 100.0 32 ............................ ATGATCCACGACGGCAATGGCTGCCGACGACT 491051 28 100.0 32 ............................ ATCCGCAAGTGCTCCAGCCAGAACTGGGACGT 491111 28 100.0 32 ............................ ACACTATAGGGCTATAGACCCGTTACTGTACT 491171 28 100.0 32 ............................ GCACCGCCGCACCTGTAAACACGCACTGCGTC 491231 28 100.0 32 ............................ GCGCCGGTATCAAACGCCTGAGGCCATGCCAG 491291 28 100.0 33 ............................ CCGTGCATGGTGGATGCAACGAGTGATGCTCCA 491352 28 100.0 32 ............................ TGCAGGCTGGAATAGAGACCCATCAACAGGTA 491412 28 100.0 32 ............................ AGCTCAGGCGGCGGCGTTTTAGCAACCGGCGC 491472 28 100.0 32 ............................ CGCTCTGTCCGCTGTGTCCGCATTCGCCGATG 491532 28 100.0 32 ............................ ATGAGCAGTTCATTGCCGTTAAACGCGCCCAG 491592 28 100.0 32 ............................ GTCTGCGCCTGGTCGGCTCCCAGCAGCGCGAT 491652 28 100.0 32 ............................ TGTCAGCCGGTCGATCAGCGACGAGTAGTCGC 491712 28 100.0 32 ............................ ACGCCGAACCAGTACCGCGAAAAGCGGGGACT 491772 28 100.0 32 ............................ TCCGGGTCATGGCGGACGCCGTGCAGGTCACC 491832 28 100.0 33 ............................ TTCAAGCACTGGGCACACCGCCCAGCCGCTCTA 491893 28 100.0 32 ............................ TGCGGAATACACCCATGCGACGACGTCGAATT 491953 28 100.0 32 ............................ TGTAATACTCCCTCGTTCCGTCCTCGTATTGT 492013 28 100.0 32 ............................ ATCTGCGCGCCCATGGCGCCCACTTGCTGTTT 492073 28 100.0 32 ............................ CAGCTGTGATGCGGAACAGTGAGCGTCAGCAT 492133 28 100.0 32 ............................ AGCAACACGAAAACCGGTCGCGGCGACCGCTC 492193 28 100.0 32 ............................ ACCTTGGACTTGGCCAGGCCAGCGGACAGCAG 492253 28 100.0 32 ............................ AAACATTCATCCTTAGAACGCCGTGAATTCGG 492313 28 100.0 32 ............................ TTGACGAATGCGCTGTATTCCTCAATTCCCGT 492373 28 100.0 32 ............................ ACCAACTCCGCCGCGGAGGCTTCTACGAACCG 492433 28 100.0 32 ............................ AGCGGACGGATAAACGAGTCAATCAATCGCGG 492493 28 100.0 32 ............................ TTATTCGGTGCCGGCTACTGCTGATAACCATC 492553 28 100.0 32 ............................ ATGCCATCGTTTGTTATTGATGCTATGGCTGT 492613 28 100.0 32 ............................ TATTGCCGTTGTTACGCCTACTACCAATGGTT 492673 28 100.0 32 ............................ ACGATTGAGCGCTGCAATCGCCTCCTGGCTGA 492733 28 100.0 32 ............................ ACTGCCAAACCAATAAGCCAAATCTTTTTCGG 492793 28 100.0 33 ............................ CTCGCGGCAGCCGGCCACGTCCACCATGGCGTT 492854 28 100.0 32 ............................ GATGTTCGGCCTGCAAGACGCGCTGGCAGCCG 492914 28 100.0 32 ............................ TCGAAGGCGTGGCCGCCGCCGACCAGCTTGGC 492974 28 100.0 33 ............................ GCTCGGCGCCATATTGCGTTGCAGCGTTCCCGC 493035 28 100.0 32 ............................ TCACACTCCCGATCGCGAGCCTCAAGCTGTCG 493095 28 100.0 32 ............................ TTGACCGTGTCGGGCTTCTTTACCGTGCTGAT 493155 28 100.0 32 ............................ ACCTCCCGCCACAATGGCGCGTACCTCGACAT 493215 28 100.0 32 ............................ AATTGAAATCTTGAAAAATCCGGCCGTAGCAT 493275 28 100.0 32 ............................ GACAACGCGCCAGGTTGAAAGATGGCAGACCG 493335 28 100.0 32 ............................ GTTCGCTGTTCCGCTCGTTCGGCATGCGTGAC 493395 28 100.0 32 ............................ TGCCTCGTGCCAGCGAATACCAACATTTCCAT 493455 28 100.0 32 ............................ AGCCACTCCGTTTTCAATCCTGGCCGGAACCC 493515 28 100.0 32 ............................ TCTCTTGCATCAATGCCTAGTATGTCTGCAAT 493575 28 100.0 19 ............................ TCTCTAGTATGTCTGCAAT Deletion [493622] 493622 28 100.0 32 ............................ AATAACTCACCAAAAATCTTAACCGCAATATC 493682 28 100.0 32 ............................ GACGTAAACGCGACAGCCATCCGTGTCACAAT 493742 28 100.0 32 ............................ TCCATCAGCGCCGCCTTGCCCCGTTTCTGTGA 493802 28 100.0 32 ............................ ATGACCGCGGCCAACAAGATTCTGCATTACGT 493862 28 100.0 32 ............................ TGCAAAACGTTCACCGTCAACGCCTCCACCGG 493922 28 92.9 32 ....G.........C............. TGCATTTTCCGCCGCCAATACCGCTGCGTCAG 493982 28 100.0 32 ............................ ATCCGGCAGTTTCAAGATGTCCCCCAGGGCCA 494042 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.9 32 GTTCACTGCCGGACAGGCAGCTCAGAAA # Left flank : CGAGCGAGTGGCCAGCGCGCAAAAAGGGCATGGCCGCACGGTGTTGCAACATGTGGTGACAGCCCGGGCGGACGGCATTGTCGACGCTCAGGCCTGGCCCGGCTGCCAAACAGTGGGTCGCGTGGATTCGGTGCGGCTGGATGGTCGCGGACAATCGGCGCTGGAGCAGCGCTATTATTTGTCGTCGCGCGCGTTGAGCGCGGAAGAGCTGGCGCAGGCGGTGCGCCGTCATTGGGCGATCGAAAACGGCCTGCATTGGTGTCTGGATGTGATTTTTCGGGAAGATAACTGCCCATTGCGCGAAGATCATGGACCGCAGAATTTTGCGCTGCTGCTGAAATTCGCGCTCAACCTGCTGCGTAGTTCGCCGTATCAGGCCAAGAAAAGCATGCGGGTGCGACGCAAGCGTGCCGGCTGGGATGATGAGGCCTTGGCTGAGTTGCTGGGCATGTCGCCTTTATGACGTGAAGGTGCGATTGCCCTGCGAGTTCGCCCACACT # Right flank : ATCGGCGTCCAGATGTTCCAGAAGGATCGCCACATTTACCGCCGGACAGGCAAGTTCCCCGCATGCGCAGGGGGATTTGCACGGAATGACGGTGGCGATGGAGCAGTGCTTATGTGTCCTGTGGGCCAGCTTAGTGGCTGCGCGGTTCCTTTCGTCGGTGGAGGTCGGCTTCGCGGGTCAGGTGGTCTAGCAGCCGTAGTGTTAGGCTTTCTCGCGCGGCGTTGGCGGGCCAGACGGCGTAGACCCCCAGCGTTTCCACTTGCCATTCCGGCAGTACGTTTGCCAGCCGTCCGGCGGCGATATCGTCTTCCACCAGAAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCCGGCAGGCGGCGTCTATGTTGTTGACGGTCAGGCGCGGCTGGAAGGCGAAGGTTTGGGTTTCGCCGGCACTCAGGCTCAGCGTCTTGCGGTTGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCCGCCAGCGCTGCCGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //