Array 1 25873-24451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPVL01000003.1 Streptococcus agalactiae strain DE-NI-007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25872 36 100.0 30 .................................... GTATAATTTAGTTAAGCTTAAATTTAACCA 25806 36 100.0 30 .................................... GAGCCTTGCTTGAGTTTGTGGAGCTTTATA 25740 36 100.0 30 .................................... TGATGTTCTTTATCAAACATTCTAAATACT 25674 36 100.0 30 .................................... AAGGCACGCGCAAGATGAATTCATTTCTAA 25608 36 100.0 30 .................................... TATTTCAAAAGTTTATTTAAACGGTATTTT 25542 36 100.0 30 .................................... CAGACAAGGAAAACTAACTTATTCCATGCT 25476 36 100.0 30 .................................... GTACCTTCTTAGAGTGATATTTTTTCATGT 25410 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 25344 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 25278 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 25212 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 25146 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 25080 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 25014 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 24948 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 24882 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 24816 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 24750 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 24684 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 24618 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 24552 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 24486 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //