Array 1 241714-240961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYY010000002.1 Campylobacter concisus strain H36O-S1 SAL_t_contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 241713 30 100.0 36 .............................. AAACTGCCATTGATGATAGCTTTAGTTTTGTTAATG 241647 30 100.0 35 .............................. AAAGTAATATTTCGATATTCTAAGGCAGATAAACT 241582 30 100.0 36 .............................. AGTTTTTTTCAGGATATGAGTAAAATTGCGGACGAG 241516 30 100.0 36 .............................. GCTTTCCACTCGTTTTCTTCGCCCTCGAGCAAAGAG 241450 30 100.0 36 .............................. TATGAATAAAATCGTCTTCACGTCCAAGCGCTGCAA 241384 30 100.0 36 .............................. ATAATCCCAGTGGCTACGTGATGAAATATATTCAAA 241318 30 100.0 36 .............................. GCGTGATCGTGCTTAGGATATACTCATCATCGTATA 241252 30 100.0 35 .............................. ATAGCATTAATAGGCAAAGGGATCATAAATCCGCC 241187 30 100.0 35 .............................. GCTCTTTATGCTTTGGATTAATTTCACTTTCTTTT 241122 30 100.0 37 .............................. ATAGCGTAAGCTCGGTCTTTTATATAGGTTTTTTGAA 241055 30 100.0 35 .............................. GGCATCGTGTTGATGAAGATCCAAATAAAGATAAA 240990 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTTCACCTCGACCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACATGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAGGCAAACAAGCTTAAAAAGTGTATCTGCGAGGATGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATCACATTTTAATAAAGCGTTTTTTAAGATTTTAAAATGCTTGAAATTTAGGGCTTGGTGTATTTACACATAGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACCTAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : AACGCATAAGCGACAAATTTAAAAGTCAAAAATTTTCAAAAAAGAGATTTAAAATAATAGATCAAATAAATAATAGTTGCTATCTTGCAAAGATGTATCAAACGAACGATAATATTGTTTTATATAGATACTTCAAAAAGCCAAAACCCCAGCCAATACAGCAAAAAAACAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACCAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 6319-6635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYY010000016.1 Campylobacter concisus strain H36O-S1 SAL_t_contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 6319 23 100.0 48 ....................... CAAGGGGATTGAAACAGAGATCTTTCGATACGATCACCATTCATTTCG 6390 23 100.0 52 ....................... TTAGGGGATTGAAACGGCTTTACGCCTTTCTCGGCTTTATGACCTCTGATGT 6465 23 91.3 53 T....................C. ATAGGGGATTGAAACTTCATCTCTGCCATGTCGAGTAGTTTCCATCCGACATA 6541 23 100.0 49 ....................... CAAGGGGATTAAAACGCATCATAGTGAAGCATACTCTCGTTGAAGTCAT 6613 23 87.0 0 C....................CA | ========== ====== ====== ====== ======================= ===================================================== ================== 5 23 95.7 51 AATTTAAACAAATTTGACCCGAT # Left flank : TCAAATTTCACTCTAAGCTCGGCATACCTCATCAAAACTCCTTAACTTCGCATAGTCTAAAACCGCGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTGGTAGTTTTATCAGCACGCCAAGACTATCTCTTATCGCCCTTATATCGCTAGAAAAGGTCAAAATCATATTAGTTTCATTATTCACTTCAATGCTCAATTTTCAAATTATCTTATTATAGTATGATTTAAAGGCAAATGTTTATATTTTTTAGATTTTTATTTAAAAATTATTATTTTTTATATATTTGTGCATACCTTTATCGCTCTTATTTTTAGTTTAAATTTCTATCTTTTTGGCTAAAATTTCGAAAATTCGTGATTTTAAAGATATTTAAGATAGGTTCTTTTTGCTTATCATTGTTAAATTTGACCTGACTAAGGGGATTAAAACTCAAATCACCTAGCCCACTTTGGCAAGTGTTC # Right flank : ACCAGGGGATATAGCGACCCATACCACACTTAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGGTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTGGGTTTAGACGAGATCTCATATGCTGATTTTAAAAAGAACTTTGACGAAAACGCAGACCATCTCATACGCTCATTGTTAAACGGCACCTACACGCCAGAGCCGCTAAGAAAGATAAACATCCCAAAAGAAAATCGCAACGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAACTTAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCAACTTACAAAGCCATAAATAGAGCCAGTAGCTTCATAAATGAAAATGACTGCTGGATACTAAAAGCCGACGTAAAAGACTTTTTCGAGTCGGTAAATCACTCCAAG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.33, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTTAAACAAATTTGACCCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 9637-10425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYY010000016.1 Campylobacter concisus strain H36O-S1 SAL_t_contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 9637 37 100.0 39 ..................................... CATCGACAACAATTTCTTCTTCAAGACCTAAGTCTTGAA 9713 37 100.0 37 ..................................... ACTATCTCGCATTGCTCAAGATAGTTCTGCCAGTCAG 9787 37 100.0 36 ..................................... TCTTGCAAGCTTACCTCCCTTTCGAAGACAACATGG 9860 37 100.0 42 ..................................... GCTAGCTCAGACTTAACTATCTCGCATTGCTCAAGATAGTTC 9939 37 100.0 38 ..................................... ACCTCTCCTAGATCGCGTACAATATTGACAATGTGAAA 10014 37 100.0 37 ..................................... GAGTTGAGTGAGCATGAACATCTCCACTAAAAGCTAA 10088 37 100.0 43 ..................................... AGATGTTTAGATCAACTTCGTCCCAGTGAACTACTACTGGGCT 10168 37 100.0 34 ..................................... GATGGTAGGTAGTTTAAATTGCGACTTATCTTGT 10239 37 100.0 34 ..................................... ATATTTAAAGCAAGGTTTAATGTATCATTTGATA 10310 37 91.9 41 ...........A.........CT.............. ATTTTCTCTCCATTCATTTCAAGAATTGTAACTTTCATAGT 10388 37 91.9 0 ..............................C.A...A | T [10422] ========== ====== ====== ====== ===================================== =========================================== ================== 11 37 98.5 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATACCTAAATTTAGGGGTTCTTTTACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAAATGACAAAGCGTAGGCGCTTTATGTTGTAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGCGATTTGCGTAGATAAATAAAAGTTACGAAAAAGAGCCATGAATTTTGCTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGATGAGCACGAGCAGATGAGTAAGATCTGCTTGATGATGAAGAAGACTTTGAGTAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTATTGAATTATTTTGTTTTGTTGAGAGAATTATAAAGCGATGTGTGGACATATTGTGTATAATTCATAAAAAACTTTAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGAATACTATGGCTACTTAAAAAGCTAAACCGCGGCGAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 23906-20673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYY010000013.1 Campylobacter concisus strain H36O-S1 SAL_t_contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 23905 37 97.3 40 ..............C...................... ATTCAGTATCTCGACTACCCAACGCATCATTAGGGCATCA 23828 37 97.3 40 ..............C...................... AATCACGCAGTTGTACCAACCGCGACCTGTTGGGAGATAG 23751 37 97.3 36 ..............C...................... ACCAAAGAACTCAGCTGGCTTAGCTTCTGAATTATA 23678 37 97.3 39 ..............C...................... CACATTCATTTGTGTTAAAAGAGAGTCGTTACTTCTCTT 23602 37 97.3 40 ..............C...................... ATGTACTAGACATACTCTAGCTTTTCTCTCAGCTTCTTTA 23525 37 100.0 36 ..................................... TTTATTTTGTCTGTGTTGTTTGCATTCCAATTTAAA 23452 37 97.3 43 ......................T.............. TCGACATATATAGTATATAGTAAGTTACCATCACTATCTACGC 23372 37 100.0 40 ..................................... AACGATATCCAACCCTCCCACTCCTGAGAGCCGTATCCGT 23295 37 94.6 40 ........T...........T................ GCTCCAAACATAGGATAAGGTCTAAATCTACTACCTATGC 23218 37 97.3 39 ..........................A.......... ACTTCTTTTTTGCCTATGGCTTCTAATGTTTCTGTTATA 23142 37 94.6 38 ..TA................................. GAGCAGTTGCTTTTTCATTGTTCTCCTTTTAAAAAATA 23067 37 100.0 40 ..................................... GCACCAGTAAACATTGTTAATTAATACCATGTCATAATAT 22990 37 94.6 41 ........T...........T................ TTCTGCATAAGCCGGATAAAATGCCCAGTATTTATGGTCAA 22912 37 100.0 41 ..................................... GTAGTAGAGATGTCTATCTCTAGGAGTTAAAAAAGGTAATC 22834 37 91.9 38 ..TA..........C...................... TTTTTCTAGCTCTTTTAGCTGTTTATCATTTTTGGCAA 22759 37 94.6 43 ..TA................................. CCGAAGCAGTAACCGCGCCGTTGTATGAGCCGGCATCGTAAGC 22679 37 94.6 34 ..TA................................. TGACCGAAACAAGCTCGTATTTTTCGACTTCAAC 22608 37 94.6 40 .................T....T.............. CCTTCAGGCTTATCCTCTATCTCCTTAGCTATAGGTGTAA 22531 37 100.0 37 ..................................... GGGTTAGCAACTATTTTTCTTACTATATCTTCTGTTA 22457 37 94.6 35 ..TA................................. CCTCTTTCGAAAAAATTTCTTCTGCAGTAATTGAT 22385 37 100.0 41 ..................................... CCGAAGCAGTAACCGCCGTTGTATGAGCCGGCATCGTAAGC 22307 37 91.9 44 ..TA................................T ACAAATGTAGCTACATAGACAACTATGAACACTAATGTTAGCAA 22226 37 100.0 38 ..................................... TAATCGGCATCAGCAGCAATATCTAGTATTTTATTTCC 22151 37 97.3 43 .........................T........... AGAATGATAAGTCTGAGTAAGTTCAGCAAAAGCTGCATCTCGC 22071 37 100.0 40 ..................................... GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTA 21994 37 97.3 41 ....................G................ CAAACGGCTTACTCTTTAATTACTAGCCTTTTCGTTCATAA 21916 37 94.6 36 ..TA................................. GTTCTACCTCTTTAGAGAAGCTAAGGCAAGCTTTGT 21843 37 94.6 39 ..TA................................. ATCTATCTCTTCCTCGTTAGGTAGAGTTATTGTAGCTTT 21767 37 94.6 34 ..TA................................. TCTGCTAACTCCACATCTTTAGCGTAAGCTTCAG 21696 37 100.0 38 ..................................... GCTTTAGCATAGCTATCATACGCAGCTTTAAGAGCTGG 21621 37 100.0 39 ..................................... GATAGCCCCCTTCATCAGCCTCTCCTTTTAGTTGCAACA 21545 37 100.0 44 ..................................... AGCGTCACGTTTGTCATAATAAACACACCAAGTGAATTCAACAA 21464 37 100.0 40 ..................................... AATCTTCCAACCAACTCCAAATTCAAACCCTTAGCCTCGG 21387 37 94.6 41 ..TA................................. AAATATTGATTAGCAACTTCAGCCATTTTGCCGAAGAATGT 21309 37 94.6 35 ..TA................................. CCTCTTTCGAAAAAATTTCTTCTGCAGTAATTGAT 21237 37 100.0 37 ..................................... AGAAACACGGGATGTCTCCCACCTCATGGTTAACAGA 21163 37 100.0 40 ..................................... GAAAACTCTAGCTCATTAAAAATAATTTAAAATTTAAATT 21086 37 100.0 33 ..................................... TTTTTTCGTTGCCAAATTGACGAGTTACTATTT 21016 37 91.9 41 ..TA..................A.............. AAAAAACCCAAAACTACATCTAAGAAAAGTTTCTCGAATGT 20938 37 97.3 40 ...............A..................... AATTATTACCAGTAGTTTTACGAGTAAGTTATACAAGGTT 20861 37 100.0 36 ..................................... ACCTCACTCAGAATTCTGTATGTTGGTTCTTTGGGG 20788 37 100.0 42 ..................................... AGTAGAGTTTATTTTGAATCCAACCTTTTCTACATCTGGATC 20709 37 91.9 0 ..TA................................T | ========== ====== ====== ====== ===================================== ============================================ ================== 43 37 97.1 39 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : GAGCTGTATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTGAAAATTTCAAAACTCCCTTTTTACCGCACTTTTATATTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCTCTATCCCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATAGAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTCATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATCGTTTTTTGGGCT # Right flank : AGGCAGGTCTTTCGAGTATAGTTCTCGAGCATTAATTCATAGATACATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGACACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTTGCTCTTGGCTTTGATGGCAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA //